SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104521

Length: 474 nt

UniGene Fasta

>sp_v3.0_unigene104521
GCCATCCTTCCTGCTGTACCGAATTCAGAGCTCCCATCTGAATTGAGGTGCTCACTGTGTCAAGGAATCTTTCGGGGGGCTGTTATGATACCATGTTGTCAGTTTAGCTTCTGCCATGAGTGTATTAGACAGGTATTGGTTGAGAAGGGTAAATGTCCTCAATGTAATTCTACTAAATTCAAGATTGATGAGCTACTTCCTAATATTGCTCTTCGTCAAGCAATTGAACGCTTTCTCGAGTCTCAAGTGACAATCAGTACTGCAGAAGATTGTGGAGCGAAACATGCACCTGATGGGGAATCTGGAATTCAAGCAAAGGCAGCAGCCTCACAAGCCCTATCTCACAGACAAGGTCTGTCTGAGGTCCGGAAGTCTATTCTTGACAATGGAGAGGGTGTCACGGTCTATAAGGCACTCCAGTCTTTCTCTCATAAAGATGAAGGCATAACTATGGAGTTTCAGGCTAGCAAAGGG

Ace file of the UniGene sp_v3.0_unigene104521

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG5222 Uncharacterized conserved protein, contains RING Zn-finger	-	-	3.0e-07	35%
FL-Next	tr=Putative uncharacterized protein ORF52; Citrus unshiu (Satsuma mandarin) (Citrus nobilis var. unshiu).	-	-	0.0	54%

Source	Gene names
Sma3	PHYPADRAFT_231964; PHYPADRAFT_80115;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	U box domain	IPR003613	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F8WLB9

Fln msg: Distance to subject end: 462 aas, your sequence is shorter than subject: 158 - 827

Fln protein: AILPAVPNSELPSELRCSLCQGIFRGAVMIPCCQFSFCHECIRQVLVEKGKCPQCNSTKFKIDELLPNIALRQAIERFLESQVTISTAEDCGAKHAPDGESGIQAKAAASQALSHRQGLSEVRKSILDNGEGVTVYKALQSFSHKDEGITMEFQASKG

Protein Length: 159

Fln nts: GCCATCCTTCCTGCTGTACCGAATTCAGAGCTCCCATCTGAATTGAGGTGCTCACTGTGTCAAGGAATCTTTCGGGGGGCTGTTATGATACCATGTTGTCAGTTTAGCTTCTGCCATGAGTGTATTAGACAGGTATTGGTTGAGAAGGGTAAATGTCCTCAATGTAATTCTACTAAATTCAAGATTGATGAGCTACTTCCTAATATTGCTCTTCGTCAAGCAATTGAACGCTTTCTCGAGTCTCAAGTGACAATCAGTACTGCAGAAGATTGTGGAGCGAAACATGCACCTGATGGGGAATCTGGAATTCAAGCAAAGGCAGCAGCCTCACAAGCCCTATCTCACAGACAAGGTCTGTCTGAGGTCCGGAAGTCTATTCTTGACAATGGAGAGGGTGTCACGGTCTATAAGGCACTCCAGTCTTTCTCTCATAAAGATGAAGGCATAACTATGGAGTTTCAGGCTAGCAAAGGG

Fln Alignment:

AllPine_a_c35520___AVPNSELPSELRCSLCQGIFRGAVMIPCCQFSFCHECIRQVLVEKGKCPQCNSTKFKIDELLPNIALRQAIERFLESQVTISTAEDCGAKHAPDGESGIQAKAAASQALSHRQGLSEVRKSILDNGEG
F8WLB9________________AMENGNFPSELKCSLCNTLFKEAVMIPCCQHSFCEKCIRLVLAEKARCPKCFSSKCRLEDLLPNVSLRQAIEHFLESQILISGSENAYHRYAPDGESGIQAK-DVSCAVTNLQREPELADSPSATGRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain