SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104495

Length: 254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene104495
TGCGTGATTACGAATCCACCCTTCTAAAGTGTTACCAGACATTTCTACAGAAGCTGATAACTTTAGGAAAGGGTTCTTCCTTGCACCAAATTGCTGTTCGATGTATGTGTATTTTACTGGAAGCAATTCAACACTTTAATTATCGGGACAGCTTGTTAGGTGCAGTTATCCCTCACATGAGCTCCATTGAGGATTTAAACAGGAGACTGAGTTGTGCTGCCATAAGATCAGTGTTTTTGAATGAGGGGAAGCAT

Ace file of the UniGene sp_v3.0_unigene104495 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleolar complex-associated protein, putative n=1 Tax=Ricinus communis RepID=B9RI11_RICCO	-	-	4.0e-22	58%
FL-Next	tr=Nucleolar complex-associated protein, putative; Ricinus communis (Castor bean).	-	-	0.0	58%
Sma3	YUP8H12R.24 protein	-	-	5.848e-06	-

Source	Gene names
Sma3	At1g79150; RCOM_1575060; YUP8H12R.24;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	CCAAT-binding factor	IPR005612	-	0.0	-
Sma3	Nucleolar complex-associated	IPR011501	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79150.1	binding chr1:29772716-29777874 REVERSE LENGTH=830	8.0e-26	59%
RefSeq	Arabidopsis thaliana	NP_178036.2	nucleolar complex-associated protein domain-containing protein [Arabidopsis thaliana]	1.0e-25	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RI11

Fln msg: Distance to subject end: 478 aas, your sequence is shorter than subject: 84 - 831

Fln protein: RDYESTLLKCYQTFLQKLITLGKGSSLHQIAVRCMCILLEAIQHFNYRDSLLGAVIPHMSSIEDLNRRLSCAAIRSVFLNEGKH

Protein Length: 85

Fln nts: TGCGTGATTACGAATCCACCCTTCTAAAGTGTTACCAGACATTTCTACAGAAGCTGATAACTTTAGGAAAGGGTTCTTCCTTGCACCAAATTGCTGTTCGATGTATGTGTATTTTACTGGAAGCAATTCAACACTTTAATTATCGGGACAGCTTGTTAGGTGCAGTTATCCCTCACATGAGCTCCATTGAGGATTTAAACAGGAGACTGAGTTGTGCTGCCATAAGATCAGTGTTTTTGAATGAGGGGAAGCAT

Fln Alignment:

AllPine_a_c35483___RDYESTLLKCYQTFLQKLITLGKGSSLHQIAVRCMCILLEAIQHFNYRDSLLGAVIPHMSSIEDLNRRLSCAAIRSVFLNEGKH
B9RI11________________RYYESTLLSTYKAYLQKLMVLEKESKFQHVAVRCICTLLEAVPHFNFRENLLGAVVEHIGSPDDIIRKLCCAAIKSLFTNEGKH

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
121	50		50		1.0
122		50		50	1.0
123	50		50		1.0
125			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain