SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104486

Length: 381 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene104486
GCTGTAACTGGCACCAAGCAGTACACATTCGAAGGCCATGAAGCTCCTGTATATTCAGTCTGCCCTCATCATAAGGAGAATATCCAGTTCATTTTCTCTACGGCTATTGATGGAAAGATAAAAGCTTGGCTTTATGATCTACTGGGATCTAGAGTAAATTATGATGCCCCTGGGCATTGGTGTACTACAATAACTTACAGTGCAGATGGAACACGGCTCTTCTCATGCGGAACAAGTAAAGAAGGTGATTCGTACTTGGTTGAGTGGAATGAAAGTGAGGGAGCAATCAAGCGAACATATTCTGGATTCCGCAAACGGTCCTTAGGAGTTGTGCAGTTTGATACAACAAGAACAGGTTTTTGGCAGCTGGTGATGAATTTC

Ace file of the UniGene sp_v3.0_unigene104486 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like [Oryza sativa Japonica Group] gb\|EAZ41606.1\| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group]	-	-	0.0	88%
FL-Next	Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1	-	-	0.0	80%
Sma3	WD-repeat protein, putative	-	-	7.615e-12	-

Source	Gene names
Sma3	At1g15750; At1g80490; At3g15880; At5g27030; CTV.2; F15P11.3; F7H2.9; GSVIVT00000315001; GSVIVT00003228001; GSVIVT00014065001; GSVIVT00016938001; GSVIVT00022669001; GSVIVT00032753001; GSVIVT00032757001; LOC_Os03g14980; MtrDRAFT_AC147963g18v2; Os01g0254100;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G80490.2	TPR1 TOPLESS-related 1 chr1:30261094-30266446 REVERSE LENGTH=1120	80%
RefSeq	Arabidopsis thaliana	NP_178164.3	Topless-related protein 1 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002327405.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WV90-1

Fln msg: Distance to subject end: 501 aas, your sequence is shorter than subject: 127 - 1119

Fln protein: AVTGTKQYTFEGHEAPVYSVCPHHKENIQFIFSTAIDGKIKAWLYDLLGSRVNYDAPGHWCTTITYSADGTRLFSCGTSKEGDSYLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRTGFWQLVMNF

Protein Length: 128

Fln nts: GCTGTAACTGGCACCAAGCAGTACACATTCGAAGGCCATGAAGCTCCTGTATATTCAGTCTGCCCTCATCATAAGGAGAATATCCAGTTCATTTTCTCTACGGCTATTGATGGAAAGATAAAAGCTTGGCTTTATGATCTACTGGGATCTAGAGTAAATTATGATGCCCCTGGGCATTGGTGTACTACAATAACTTACAGTGCAGATGGAACACGGCTCTTCTCATGCGGAACAAGTAAAGAAGGTGATTCGTACTTGGTTGAGTGGAATGAAAGTGAGGGAGCAATCAAGCGAACATATTCTGGATTCCGCAAACGGTCCTTAGGAGTTGTGCAGTTTGATACAACAAGAACAGGTTTTTGGCAGCTGGTGATGAATTTC

Fln Alignment:

AllPine_a_c35467___AVTGTKQYTFEGHEAPVYSVCPHHKENIQFIFSTAIDGKIKAWLYDLLGSRVNYDAPGHWCTTITYSADGTRLFSCGTSKEGDSYLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRTGF
Q0WV90-1______________AATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
139	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain