SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104423

Length: 773 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene104423 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative DNA-binding protein [Arabidopsis thaliana] gb\|AAK76494.1\| putative helicase [Arabidopsis thaliana] gb\|AAM15033.1\| putative helicase [Arabidopsis thaliana] gb\|AAD17447.2\| putative helicase [Arabidopsis thaliana] gb\|AAM14300.1\| putative helicase [A	-	-	2.8026e-45	69%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	68%

Source	Gene names
Sma3	At2g03270; GSVIVT00025552001; LOC_Os03g38990; OSJNBa0010D22.27; Os03g0586900; OsI_12407; OsJ_11580; POPTRDRAFT_560544; RCOM_0089600; VITISV_016912; atpc-2 gene;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA helicase, putative	IPR004483	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G03270.1	DNA-binding protein, putative chr2:994071-995990 FORWARD LENGTH=639	69%
RefSeq	Arabidopsis thaliana	NP_565299.1	putative DNA-binding protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002308965.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
307	75		25		0.996473
362		25		75	0.996473
363	25		75		0.996473
365			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain