SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104278

Length: 413 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene104278
TTTACAATTATGGAAGTGTAGACTATGAATTGTTGTTGATGGATCAAGAAACTTTGAGTTTGAGATAGAAGTAGTTCCTATAAGATGGAGTTCTTTGATTCAGACTTTTGCATCTTCAGTAGCTAAAATTAGTAACGCTGGAAGCAGGGGCTAGGATATTATCTGAATGGGTGCCATGGCAGGGTCTTCTCTGCCATCTCTAGGTCGTGTAAGGCTGACGGACTTGATTGCTGCAGATGGACTTCTTTCGGACAGATACAAATTTGCTGTATCCACACTTTCACAGTCTCTTGCAAGGTATTATGCAGCAATTATTGAGGTGCCTGCTGGGGATGATGTAATGCTGAGATGTGTAATAGATTCCGCTCGGATGTATTTCCATCAAAGATCATACCAGGACCAGAGATGCTCCA

Ace file of the UniGene sp_v3.0_unigene104278 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%

Source	Gene names
Sma3	GSVIVT00025758001; OJ1457_D07.125-1; OJ1457_D07.125-2; Os07g0496900; OsI_26091; OsJ_24337; P0005E02.106-1; P0005E02.106-2; PHYPADRAFT_129876; PHYPADRAFT_140881; PHYPADRAFT_65751; POPTRDRAFT_661173; RCOM_1576080; VITISV_011851;

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipocalin	IPR002345	-	0.0	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12940.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr3:4130242-4131912 REVERSE LENGTH=474	1.0e-22	61%
RefSeq	Arabidopsis thaliana	NP_187900.2	dioxygenase-like protein [Arabidopsis thaliana]	2.0e-22	61%
RefSeq	Populus trichocarpa	XP_002317617.1	predicted protein [Populus trichocarpa]	4.0e-21	58%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A5AJS2

Fln msg: Distance to subject end: 386 aas, your sequence is shorter than subject: 82 - 465

Fln protein: MGAMAGSSLPSLGRVRLTDLIAADGLLSDRYKFAVSTLSQSLARYYAAIIEVPAGDDVMLRCVIDSARMYFHQRSYQDQRCS

Protein Length: 83

Fln nts: TTTACAATTATGGAAGTGTAGACTATGAATTGTTGTTGATGGATCAAGAAACTTTGAGTTTGAGATAGAAGTAGTTCCTATAAGATGGAGTTCTTTGATTCAGACTTTTGCATCTTCAGTAGCTAAAATTAGTAACGCTGGAAGCAGGGGCTAGGATATTATCTGA_-_ATGGGTGCCATGGCAGGGTCTTCTCTGCCATCTCTAGGTCGTGTAAGGCTGACGGACTTGATTGCTGCAGATGGACTTCTTTCGGACAGATACAAATTTGCTGTATCCACACTTTCACAGTCTCTTGCAAGGTATTATGCAGCAATTATTGAGGTGCCTGCTGGGGATGATGTAATGCTGAGATGTGTAATAGATTCCGCTCGGATGTATTTCCATCAAAGATCATACCAGGACCAGAGATGCTCCA

Fln Alignment:

AllPine_a_c35146___MAGSSLPSLGRVRLTDLIAADGLLSDRYKFAVSTLSQSLARYYAAIIEVPAGDDVMLRCVIDSARMYFHQRS
A5AJS2________________MAGNSLPSLGRVKLCDLIACEGLPSDSYKLSVSTLSQSLAQYSAAIIQFPSSDGALLRSGLDSAHLYFHQRA

SNPs (tot: 3)

Position	A %	C %	T %	Probability
351		33	66	0.997453
352	33	66		0.997464
354		66	33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain