SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene103904

Length: 474 nt

UniGene Fasta

>sp_v3.0_unigene103904
CACAGAAGTGGATTTTGCCCAATTTTCTTCTACAGACCTGGTGTATATCCGTCCCAAGGAAATATTCAAGAGTTGAGCCTTTTGTCCGACCCTCCAGTTTCTATAGCTGGAAATCCGGAAAGCGTCCCTGGTTGGACCCCAAATGGTGTACCTAGATCTCTAAAAACCAACCAGTGTGTCAATGCAAGCACTGGGAATCTCCCGATGGTGCCTTTTACAGAAACCCAAAATGTTGCTCATGTAAAAGGATTGCAATCGGACTCAAAGAACAATTTTGTGCAACATCATTTTGAGCTTCACGAAGATCCATCTTTCTGGGATGACCACAATGTTCAGGTTGTTATTCGTATTCGGCCTCTTAGCAGCATTGAAGTTGCTTCTCAAGGTCATTCTAGATGTGTCAGACAAGACAGTAGCCACACTATTACATGGCTGGGGCACCCAGAGTCTCGTTTTACATTTGACCTTGTAGCT

Ace file of the UniGene sp_v3.0_unigene103904

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinesin, putative n=1 Tax=Ricinus communis RepID=B9SS38_RICCO	-	-	5.0e-23	48%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	77%
Sma3	Kinesin-like protein	-	-	5.315e-06	-

Source	Gene names
Sma3	At3g44050; GSVIVT00017472001; GSVIVT00036525001; LOC_Os03g53920; LOC_Os12g39980; MtrDRAFT_AC150799g23v2; OSJNBa0047E24.25; Os03g0750200; Os12g0590500; OsI_13521; OsI_27028; OsJ_12582; OsJ_25289; OsJ_36705; PHYPADRAFT_135925; PHYPADRAFT_73414; POPTRDRAFT_7

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G44050.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr3:15818738-15824792 FORWARD LENGTH=1263	2.0e-24	69%
RefSeq	Arabidopsis thaliana	NP_189991.2	kinesin motor protein-like protein [Arabidopsis thaliana]	2.0e-24	69%
RefSeq	Populus trichocarpa	XP_002313626.1	predicted protein [Populus trichocarpa]	1.0e-26	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BDL5

Fln msg: Distance to subject end: 425 aas, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 90 - 554

Fln protein: MVPFTETQNVAHVKGLQSDSKNNFVQHHFELHEDPSFWDDHNVQVVIRIRPLSSIEVASQGHSRCVRQDSSHTITWLGHPESRFTFDLVA

Protein Length: 91

Fln nts: CACAGAAGTGGATTTTGCCCAATTTTCTTCTACAGACCTGGTGTATATCCGTCCCAAGGAAATATTCAAGAGTTGAGCCTTTTGTCCGACCCTCCAGTTTCTATAGCTGGAAATCCGGAAAGCGTCCCTGGTTGGACCCCAAATGGTGTACCTAGATCTCTAAAAACCAACCAGTGTGTCAATGCAAGCACTGGGAATCTCCCGATGGTGCCTTTTACAGAAACCCAAAATGTTGCTCATGTAAAAGGATTGCAATCGGACTCAAAGAACAATTTTGTGCAACATCATTTTGAGCTTCACGAAGATCCATCTTTCTGGGATGACCACAATGTTCAGGTTGTTATTCGTATTCGGCCTCTTAGCAGCATTGAAGTTGCTTCTCAAGGTCATTCTAGATGTGTCAGACAAGACAGTAGCCACACTATTACATGGCTGGGGCACCCAGAGTCTCGTTTTACATTTGACCTTGTAGCT

Fln Alignment:

AllPine_a_c34524___FELHEDPSFWDDHNVQVVIRIRPLSSIEVASQGHSRCVRQDSSHTITWLGHPESRFTFDLVA
A5BDL5________________FELHEDPSFWKDHNVQVIIRIRPLSSSEISLQGYNKCIRQDSCQAITWTGHPESRFTFDLVA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
152	50	50			1.0
340	33		66		0.997458
341	33			66	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain