SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene103643

Length: 456 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene103643
TGCTGACATGGGCCATAATATTATTGGGAATGAATCAAGATTGGCAAGAACGAGGACGCAAAGAGGTGTTGCAAGTATTTGGAAAAGATGTTTATACAGATGCAGATAGCCTGAATCACCTTAAGATTGTGGGAATGATTCTGAATGAGGCCCTAAGACTTTATCCACCAGCAGTGGTTCTGCTCCGTCAAGCGGTAAAGTCAGTGAAACTTGGAAGGCTTTCAATTCCCGCAGGCACCCAACTTATACTTCCAATCCTCGTAACGCACCATGATCCAGCTTTATGGGGAAATGATGCAAATGAGTTTAACCCAGGGCGATTTAGTGAGGGAATCGCCAAGGCTGCCAGGCATCCCTTCGCGTTCCTGCCCTTTGGATCTGGTCCAAGAATTTGCGTGGGTCAGAACCTTGCGCTGATGGAAGCAAAAGTGGTATTGGCCATGGTTCTGCAACGAT

Ace file of the UniGene sp_v3.0_unigene103643 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 CYP734A7 n=2 Tax=Zea mays RepID=B6SWV0_MAIZE	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Cytochrome P450	-	-	6.207e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Secologanin synthase.	EC:1.3.3.9	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Monoterpenoid biosynthesis	00902	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT4g27710; At1g17060; At1g67110; At1g75130; At2g26710; At2g46950; At2g46960; At3g14610; At3g14610/MIE1.11; At3g14620; At3g14650; At3g14660; At3g14680; At3g14690; At4g27710; At5g24910; At5g38450; B1051E10.30; B1085F01.11; B1085F01.9; CL-8904; CYP709C1; CYP

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	steroid hydroxylase activity	GO:0008395	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	secologanin synthase activity	GO:0050616	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	alkaloid metabolic process	GO:0009820	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	brassinosteroid homeostasis	GO:0010268	Biological Process	-
Sma3	brassinosteroid metabolic process	GO:0016131	Biological Process	-
Sma3	gibberellin catabolic process	GO:0045487	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group II	IPR002402	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G26710.1	BAS1, CYP734A1, CYP72B1 Cytochrome P450 superfamily protein chr2:11380700-11383413 FORWARD LENGTH=520	53%
RefSeq	Arabidopsis thaliana	NP_180239.1	PHYB activation tagged suppressor 1 protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002334834.1	cytochrome P450 [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 151 - 517

Fln protein: LTWAIILLGMNQDWQERGRKEVLQVFGKDVYTDADSLNHLKIVGMILNEALRLYPPAVVLLRQAVKSVKLGRLSIPAGTQLILPILVTHHDPALWGNDANEFNPGRFSEGIAKAARHPFAFLPFGSGPRICVGQNLALMEAKVVLAMVLQR

Protein Length: 152

Fln nts: TGCTGACATGGGCCATAATATTATTGGGAATGAATCAAGATTGGCAAGAACGAGGACGCAAAGAGGTGTTGCAAGTATTTGGAAAAGATGTTTATACAGATGCAGATAGCCTGAATCACCTTAAGATTGTGGGAATGATTCTGAATGAGGCCCTAAGACTTTATCCACCAGCAGTGGTTCTGCTCCGTCAAGCGGTAAAGTCAGTGAAACTTGGAAGGCTTTCAATTCCCGCAGGCACCCAACTTATACTTCCAATCCTCGTAACGCACCATGATCCAGCTTTATGGGGAAATGATGCAAATGAGTTTAACCCAGGGCGATTTAGTGAGGGAATCGCCAAGGCTGCCAGGCATCCCTTCGCGTTCCTGCCCTTTGGATCTGGTCCAAGAATTTGCGTGGGTCAGAACCTTGCGCTGATGGAAGCAAAAGTGGTATTGGCCATGGTTCTGCAACGAT

Fln Alignment:

AllPine_a_c34097___LTWAIILLGMNQDWQERGRKEVLQVFGKDVYTDADSLNHLKIVGMILNEALRLYPPAVVLLRQAVKSVKLGRLSIPAGTQLILPILVTHHDPALWGNDANEFNPGRFSEGIAKAARHPFAFLPFGSGPRICVGQNLALMEAKVVLAMVLQR
A9NWW9________________LTWTIILLGMHQDWQDRGRKEVLEVCGKNVVPDADSVNHLKIVGMILNEALRLYPPAVFLQRQAVKPMQLGRLSIPAGTQLLLPILAIHHDQCLWGNDANEFNPARFSEGIAKAVKHPLAFMPFGFGPRICVGQNFALLEAKVVLAMILQR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
289	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain