SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene103590

Length: 133 nt

UniGene Fasta

>sp_v3.0_unigene103590
AATCCTGGATGCAGCTGGGTTGAGGTGAAGAATAGGGTGTATACATTCCTGACAGGAGATCAATCACATCCAGAGACAGAAAAGATCTATGCAGCATTGGAAGGATTGGTAGAGCGGATGAAGGAAGCACATT

Ace file of the UniGene sp_v3.0_unigene103590

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	2.0e-08	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20230.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:7009570-7011852 FORWARD LENGTH=760	4.0e-11	48%
RefSeq	Arabidopsis thaliana	NP_173449.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	6.0e-11	48%
RefSeq	Populus trichocarpa	XP_002306801.1	predicted protein [Populus trichocarpa]	3.0e-11	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 92 aas, your sequence is shorter than subject: 44 - 246

Fln protein: NPGCSWVEVKNRVYTFLTGDQSHPETEKIYAALEGLVERMKEAH

Protein Length: 45

Fln nts: AATCCTGGATGCAGCTGGGTTGAGGTGAAGAATAGGGTGTATACATTCCTGACAGGAGATCAATCACATCCAGAGACAGAAAAGATCTATGCAGCATTGGAAGGATTGGTAGAGCGGATGAAGGAAGCACATT

Fln Alignment:

AllPine_a_c34015___PGCSWVEVKNRVYTFLTGDQSHPETEKIYAALEGLVERMKEA
D5AAE0________________PGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain