SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene103542

Length: 225 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene103542
ATGGGACTGTGACTGGGGAAAAATATAAAGCCAGCATATGGTAGTGGGGGAATCCTTCCTTAAAAAAGTTGTGACTCCAATATATAATGTTATTTCAGAGGAAGTCAAGAGAAATAGAAACGGGACAGCCAAACACTCGCAATGGAGGAACTATGATGATCTGAATGAATTTTTCTGGTCAGTTGATTGTTTTCGCCTTGGCTGGCCAATGCGTGCAGATGCAGA

Ace file of the UniGene sp_v3.0_unigene103542 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	callose synthase catalytic subunit-like protein [Arabidopsis thaliana]	-	-	5.0e-22	75%
FL-Next	sp=Callose synthase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Sma3	1,3-beta-glucan synthase	-	-	1.084e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At1g05570; At1g06490; At2g13680; At2g31960; At3g14570; At3g59100; At5g13000; At5g36870; CALS1; CALS2; CALS3; CALS4; CALS5; CALS6; CALS7; CALS8; F12K11.17; F13J11.3; F17J16.150; F22D22.29; F3F20.1; F5H8.14; GSL11; GSL12; GSL2; GSL3; GSL4; GSL6; GSL7; GSL9;

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	pollen wall assembly	GO:0010208	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	0.0	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13000.1	ATGSL12, gsl12 glucan synthase-like 12 chr5:4110445-4121202 REVERSE LENGTH=1955	4.0e-27	75%
RefSeq	Arabidopsis thaliana	NP_001154712.2	callose synthase [Arabidopsis thaliana]	5.0e-27	75%
RefSeq	Populus trichocarpa	XP_002304888.1	predicted protein [Populus trichocarpa]	2.0e-28	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LXT9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1515 aas, your sequence is shorter than subject: 74 - 1955

Fln protein: WDCDWGKI*SQHMVVGESFLKKVVTPIYNVISEEVKRNRNGTAKHSQWRNYDDLNEFFWSVDCFRLGWPMRADA

Protein Length: 75

Fln nts: ATGGGACTGTGACTGGGGAAAAATATAAAGCCAGCATATGGTAGTGGGGGAATCCTTCCTTAAAAAAGTTGTGACTCCAATATATAATGTTATTTCAGAGGAAGTCAAGAGAAATAGAAACGGGACAGCCAAACACTCGCAATGGAGGAACTATGATGATCTGAATGAATTTTTCTGGTCAGTTGATTGTTTTCGCCTTGGCTGGCCAATGCGTGCAGATGCAGA

Fln Alignment:

AllPine_a_c33934___ESFLKKVVTPIYNVISEEVKRNRNGTAKHSQWRNYDDLNEFFWSVDCFRLGWPMRADA
Q9LXT9________________DAFLRKVVTPIYEVIQMEAQRSKKGKSKHSQWRNYDDLNEYFWSVDCFRLGWPMRADA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
13		66	33		0.997452
15		75		25	0.996476
127	25			75	0.996473
130		25	75		0.996473
132	75			25	0.996473
136	75		25		0.996473
140			25	75	0.996473
141	75		25		0.996473
142		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain