SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene103414

Length: 439 nt

UniGene Fasta

>sp_v3.0_unigene103414
CGTCGTGACCTTGGCTGTCACTCATTTTTGTTCAGCTCGTTCAAAGTTTGGATCTCATCAAGGTTCCGATAGCTCGTGCAGTGGTTATTTGGATGGTTGGAGAGTACAGCTCTACCGGTGATTTGATCCCCAAGATAGTACCTACTATTCTGAAGTACTTGGGTGCCTGCTTTCCAAGAGAAGGATCAGAGGCTAAGCTACAAATACTCAACTGTGTTGCCAAGGTAGTTTTGCATTCTCTGGCTGTTGATCGAAACATTATATTGCTGGTGGCAAACTATGTACTTGACATGGGAAAATGTGACTTAAGCTACGATGTTCGAGATCGAGCACGTATGCTCAAAAAGCTTTTAGCACCTTATTTATCTGGTGTTGGTTTGGATGAAGGAAATCATGCTCCACAAACTTCCAAAGAAGGAGAACACCTTGTATTACTTGA

Ace file of the UniGene sp_v3.0_unigene103414

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative adaptor-related protein complex AP-3, beta 2 subunit [Oryza sativa Japonica Group] dbj\|BAD87418.1\| putative adaptor-related protein complex AP-3, beta 2 subunit [Oryza sativa Japonica Group] gb\|EAZ15002.1\| hypothetical protein OsJ_04940 [Oryza sa	-	-	4.0e-25	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%

Source	Gene names
Sma3	At3g55480; GSVIVT00018474001; Os01g0973300; OsI_05405; OsJ_04940; P0518C01.41; P0698H10.15; T22E16.140;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane coat	GO:0030117	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	endocytosis	GO:0006897	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Adaptor protein complex AP-3, beta subunit	IPR017108	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55480.2	" PAT2 protein affected trafﬁcking 2 chr3:20566372-20571171 REVERSE LENGTH=1115"	4.0e-30	52%
RefSeq	Arabidopsis thaliana	NP_567022.1	AP3-complex subunit beta-A [Arabidopsis thaliana]	4.0e-30	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNI5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 343 aas, your sequence is shorter than subject: 145 - 903

Fln protein: S*PWLSLIFVQLVQSLDLIKVPIARAVVIWMVGEYSSTGDLIPKIVPTILKYLGACFPREGSEAKLQILNCVAKVVLHSLAVDRNIILLVANYVLDMGKCDLSYDVRDRARMLKKLLAPYLSGVGLDEGNHAPQTSKEGEHLVLL

Protein Length: 146

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGTTCAGCTCGTTCAAAGTTTGGATCTCATCAAGGTTCCGATAGCTCGTGCAGTGGTTATTTGGATGGTTGGAGAGTACAGCTCTACCGGTGATTTGATCCCCAAGATAGTACCTACTATTCTGAAGTACTTGGGTGCCTGCTTTCCAAGAGAAGGATCAGAGGCTAAGCTACAAATACTCAACTGTGTTGCCAAGGTAGTTTTGCATTCTCTGGCTGTTGATCGAAACATTATATTGCTGGTGGCAAACTATGTACTTGACATGGGAAAATGTGACTTAAGCTACGATGTTCGAGATCGAGCACGTATGCTCAAAAAGCTTTTAGCACCTTATTTATCTGGTGTTGGTTTGGATGAAGGAAATCATGCTCCACAAACTTCCAAAGAAGGAGAACACCTTGTATTACTTGA

Fln Alignment:

AllPine_a_c33716___IFVQLVQSLDLIKVPIARAVVIWMVGEYSSTGDLIPKIVPTILKYLGACFPREGSEAKLQILNCVAKVVLHS-LAVDRNIILLVANYVLDMGKCDLSYDVRDRARMLKKLLA
B8LNI5________________IIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLE----TFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATQETD---NPDLRDRAYIYWRLLS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
246	25		75		0.996473
247	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain