SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene103336

Length: 577 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene103336
AAATTCATGGTTACACAATTAGAAATGATTTATTATCTGATGTATTTGTTGGAAACGCCCTGACAGACATGTATGCTAAATGTGGGAGCATAAAATATGCACGCAAGTTGTTTGACAACCTGTCTCAAAAAGATGTTGCCTCATGGACCATAATGATTGCAGCGTATGTTAAAAATGGGCATGGTAAAGATACTCTCCTTCTTTTTGACCAAATGCAAGAGGCATGCGTTATGCCTAATCACATAACCTTCATCGCTATTCTTTATGCCTGCAGGCACGCAGGCTTGGTTGAGGAAGGCTGGAAGTACTTCAATCTCATGAGCCTTGACTGGCACATCACACCGAATCTGGAACACCATGCCTGCATGGTTGATCTCCTTTGCCACGCTGGACGCCTAGATGAGGCATATAACTTTATCAAAGGTATGCCACTGGAACGTGATGCTAGCATCTGGGGTACATTGCTTGAAGCTTGCAAAAGACATTGCAATATAGAGCTTGGAGCGCTTGTTGCAGATCGAGTTTTTGAGTTGGAACCTGAAAATGTTAAATATTATATAACTCTGTCGAACATTTA

Ace file of the UniGene sp_v3.0_unigene103336 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	2.389e-12	-

Source	Gene names
Sma3	At1g06140; At1g11290; At1g20230; At2g01510; At2g13600; At2g40720; At3g12770; At3g23330; At3g24000; At3g26782; At3g49140; At3g49170; At3g53360; At3g57430; At4g02750; At4g18750; At4g19191; At4g21300; At4g33990; B1032F05.19; B1080A02.28; B1358B12.23; EMB2261

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Zinc finger-XS domain	IPR005381	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G18750.1	DOT4 Pentatricopeptide repeat (PPR) superfamily protein chr4:10304850-10307465 FORWARD LENGTH=871	50%
RefSeq	Arabidopsis thaliana	NP_193610.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002305733.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 159 aas, your sequence is shorter than subject: 191 - 795

Fln protein: IHGYTIRNDLLSDVFVGNALTDMYAKCGSIKYARKLFDNLSQKDVASWTIMIAAYVKNGHGKDTLLLFDQMQEACVMPNHITFIAILYACRHAGLVEEGWKYFNLMSLDWHITPNLEHHACMVDLLCHAGRLDEAYNFIKGMPLERDASIWGTLLEACKRHCNIELGALVADRVFELEPENVKYYITLSNI

Protein Length: 192

Fln nts: AAATTCATGGTTACACAATTAGAAATGATTTATTATCTGATGTATTTGTTGGAAACGCCCTGACAGACATGTATGCTAAATGTGGGAGCATAAAATATGCACGCAAGTTGTTTGACAACCTGTCTCAAAAAGATGTTGCCTCATGGACCATAATGATTGCAGCGTATGTTAAAAATGGGCATGGTAAAGATACTCTCCTTCTTTTTGACCAAATGCAAGAGGCATGCGTTATGCCTAATCACATAACCTTCATCGCTATTCTTTATGCCTGCAGGCACGCAGGCTTGGTTGAGGAAGGCTGGAAGTACTTCAATCTCATGAGCCTTGACTGGCACATCACACCGAATCTGGAACACCATGCCTGCATGGTTGATCTCCTTTGCCACGCTGGACGCCTAGATGAGGCATATAACTTTATCAAAGGTATGCCACTGGAACGTGATGCTAGCATCTGGGGTACATTGCTTGAAGCTTGCAAAAGACATTGCAATATAGAGCTTGGAGCGCTTGTTGCAGATCGAGTTTTTGAGTTGGAACCTGAAAATGTTAAATATTATATAACTCTGTCGAACATTTA

Fln Alignment:

AllPine_a_c33584___IHGYTIRNDLLSDVFVGNALTDMYAKCGSIKYARKLFDNLSQKDVASWTIMIAAYVKNGHGKDTLLLFDQMQEACVMPNHITFIAILYACRHAGLVEEGWKYFNLMSLDWHITPNLEHHACMVDLLCHAGRLDEAYNFIKGMPLERDASIWGTLLEACKRHCNIELGALVADRVFELEPENVKYYITLSNI
B8LQA8________________IHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain