SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene103054

Length: 449 nt

UniGene Fasta

>sp_v3.0_unigene103054
ATGGGTAGATTTTGGTAAGTGCAATTGCCTTGTTTACCTTCCTCAGAATTCTCATAGGATTGTTACTACTGATGAACATTGTAATGAGTGTGGATCAACCATTCTTGAAGTAGACTTCAACAAAAATGACACTCCACTTAAAGATGGGGCCACATTACACAAAGCATGCGTCCTATGTGATGACTTGTTGCACTCCATGGTAGAGGTGAAGCACGGTAAGTCATTTTTCAGGAGAACAGGCAAAAGTAGAGGAAGGAGTGGTGGTCGTGGAAGAGGCCGAGGGAGAGGAAGAGGACGTGGGCGTGGTAAGAATGAAGATCCTAAGATGAGTTTTCGAGACTTTTAAGTAGGTCACTAATTCTAGTTGATTCTAACATGCTTGGCCTGGCCAAAATATTCATATCAAGAGACATTCTTTGGTAGTTATTCAATTATCTGTCATATATTTG

Ace file of the UniGene sp_v3.0_unigene103054

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA topoisomerase n=1 Tax=Ricinus communis RepID=B9RRL8_RICCO	-	-	3.0e-28	59%
FL-Next	sp=DNA topoisomerase; Ricinus communis (Castor bean).	-	-	0.0	70%
Sma3	Putative DNA topoisomerase III beta	-	-	7.196e-09	-

Source	Gene names
Sma3	At2g32000; GSVIVT00033522001; Os09g0500600; OsI_31918; OsJ_29901; PHYPADRAFT_228008; POPTRDRAFT_1099630; RCOM_1646110;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	DNA topoisomerase type I activity	GO:0003917	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-
Sma3	DNA unwinding involved in replication	GO:0006268	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IA	IPR000380	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	DNA topoisomerase, type IA, domain 2	IPR003601	-	-
Sma3	DNA topoisomerase, type IA, DNA-binding	IPR003602	-	-
Sma3		IPR006154	-	-
Sma3	Toprim domain	IPR006171	-	-
Sma3	DNA topoisomerase, type IA, central	IPR013497	-	-
Sma3	DNA topoisomerase, type IA, central region, subdomain 1	IPR013824	-	-
Sma3	DNA topoisomerase, type IA, central region, subdomain 3	IPR013826	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G32000.1	DNA topoisomerase, type IA, core chr2:13615999-13621563 REVERSE LENGTH=865	2.0e-27	54%
RefSeq	Arabidopsis thaliana	NP_001031463.1	DNA topoisomerase III [Arabidopsis thaliana]	3.0e-27	54%
RefSeq	Populus trichocarpa	XP_002321105.1	predicted protein [Populus trichocarpa]	4.0e-33	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RRL8

Fln msg: your sequence is shorter than subject: 115 - 865

Fln protein: WVDFGKCNCLVYLPQNSHRIVTTDEHCNECGSTILEVDFNKNDTPLKDGATLHKACVLCDDLLHSMVEVKHGKSFFRRTGKSRGRSGGRGRGRGRGRGRGRGKNEDPKMSFRDF*

Protein Length: 116

Fln nts: ATGGGTAGATTTTGGTAAGTGCAATTGCCTTGTTTACCTTCCTCAGAATTCTCATAGGATTGTTACTACTGATGAACATTGTAATGAGTGTGGATCAACCATTCTTGAAGTAGACTTCAACAAAAATGACACTCCACTTAAAGATGGGGCCACATTACACAAAGCATGCGTCCTATGTGATGACTTGTTGCACTCCATGGTAGAGGTGAAGCACGGTAAGTCATTTTTCAGGAGAACAGGCAAAAGTAGAGGAAGGAGTGGTGGTCGTGGAAGAGGCCGAGGGAGAGGAAGAGGACGTGGGCGTGGTAAGAATGAAGATCCTAAGATGAGTTTTCGAGACTTTTAA___GTAGGTCACTAATTCTAGTTGATTCTAACATGCTTGGCCTGGCCAAAATATTCATATCAAGAGACATTCTTTGGTAGTTATTCAATTATCTGTCATATATTTG

Fln Alignment:

AllPine_a_c33045___CNCLVYLPQNSHRIVTTDEHCNECGSTILEVDFNKNDTPLKDGATLHKACVLCDDLLHSMVEVKHGKSFFXXXXXXXXXXXXXXXXXXXXXXXXXXXNEDPKMSFRDF
B9RRL8________________CNCLVLLPQGAHRIATTRERCPECDSTIIEVDFNKNTTPLEDGATLHIGCILCDDLLHSLVEVKHGKSFF---KRLGAGRRGRGAGRGRGRGRSSGRRGDPKMSFRDF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain