SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102912

Length: 438 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene102912
GTGGAGATTTGTCAAATTTCCCAAGGAGTCCGGAAGCATCCGCAAACTTTGGCATGACGACAGATTTAGTTCCTGGAGATTTGTCAAATTTCCCAAGGGTTCGGGAAGCATCTGCAAACATTTGCACGAAGACAGATTTAAATCATGGAGACTCGTCAAATTTCCGAAAGAGATCGGAAGCCTCTCCAAACTTTCGCAAAAAGAGAGATTGATGTTTTGGAGATTTATCAAATTTCCCAAGGAAACTGGGAGCATCTTCAAACTTCGACACACTGAAATATTAATGTATTGAAGATTTGTTAAATTTCCCAAGGAAATTGGAAGCCTCTTCAAACTTGTCGAATAAGACAGATCAATTTGTAGAAGACCTGTTAAATTCCCGAAGGAATCTGGAAGCATCTCCAACATTCTGCACATGGACAGATTGATGTACTGAAG

Ace file of the UniGene sp_v3.0_unigene102912 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	1.0e-30	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Disease resistance protein (TIR-NBS-LRR class), putative	-	-	9.004e-08	-

Source	Gene names
Sma3	At1g69550; At2g14080; At3g04220; At5g11250; At5g44510; F10D13_24; F2I11_140; Os01g0260500; OsI_01261; OsI_05113; OsI_30909; OsJ_01178; OsJ_04697; OsJ_28895; P0504E02.12-1; P0699D11.16; PHYPADRAFT_11286; PHYPADRAFT_116858; PHYPADRAFT_11744; PHYPADRAFT_1215

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Protein of unknown function DUF220	IPR003863	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) chr1:26148836-26153374 REVERSE LENGTH=1400	4.0e-33	55%
RefSeq	Arabidopsis thaliana	NP_564971.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	5.0e-33	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0Z4

Fln msg: atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 145 - 290

Fln protein: WRFVKFPKESGSIRKLWHDDRFSSWRFVKFPKGSGSICKHLHEDRFKSWRLVKFPKEIGSLSKLSQKERLMFWRFIKFPKETGSIFKLRHTEILMY*RFVKFPKEIGSLFKLVE*DRSICRRPVKFPKESGSISNILHMDRLMY*

Protein Length: 146

Fln nts: GTGGAGATTTGTCAAATTTCCCAAGGAGTCCGGAAGCATCCGCAAACTTTGGCATGACGACAGATTTAGTTCCTGGAGATTTGTCAAATTTCCCAAGGGTTCGGGAAGCATCTGCAAACATTTGCACGAAGACAGATTTAAATCATGGAGACTCGTCAAATTTCCGAAAGAGATCGGAAGCCTCTCCAAACTTTCGCAAAAAGAGAGATTGATGTTTTGGAGATTTATCAAATTTCCCAAGGAAACTGGGAGCATCTTCAAACTTCGACACACTGAAATATTAATGTATTGAAGATTTGTTAAATTTCCCAAGGAAATTGGAAGCCTCTTCAAACTTGTCGAATAAGACAGATCAATTTGTAGAAGACCTGTTAAATTCCCGAAGGAATCTGGAAGCATCTCCAACATTCTGCACATGGACAGATTGATGTACTGA___AG

Fln Alignment:

AllPine_a_c32815___WRFVKFPKESGSIRKLWHDDRFSSWRFVKFPKGSGSICKHLHEDRFKSWRLVKFPKEIGSLSKLSQKERLMFWRFIKFPKETGSIFKLRHTEILMY*RFVKFPKEIGSLFKLVE*DRSICRRPVKFPKESGSISNILH
A9P0Z4________________WRFVKFPKESGSTSKLSHPRRSMYWRFVKFPREFGSTSKLLHVCRVIRWRFVKFPTEFGSRFNLLQPNSQICWRFVKFPKESGSTSKLSHLSRIIRWRFVKSPKEFGSRFNLKQPNSSICWRFVKFPKESGSTSKLVH

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
346	33		66		0.997452
349	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain