SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102887

Length: 741 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene102887 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp\|Q9FNI6.1\|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj\|BAB11681.1\| DNA repa	-	-	0.0	57%
FL-Next	sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Sma3	DNA repair helicase rad5,16, putative	-	-	5.21e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	6.017e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	6.017e-06	%
Sma3	Lipopolysaccharide biosynthesis	00540	6.017e-06	%
Sma3	Folate biosynthesis	00790	6.017e-06	%
Sma3	Metabolic pathways	01100	6.017e-06	%

Source	Gene names
Sma3	At5g05130; At5g22750; At5g43530; CHR1526; CHR903; CHR931; GSVIVT00002586001; GSVIVT00020178001; GSVIVT00022099001; GSVIVT00023276001; K9D7.2; MDJ22.17; MUG13.1; OJ1003_C06.108; OSJNBa0096F01.3; Os02g0527100; Os04g0177300; Os07g0642400; OsI_07472; OsI_1504

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3		GO:0006350	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	HIP116, Rad5p N-terminal	IPR014905	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22750.1	RAD5, RAD5A DNA/RNA helicase protein chr5:7565374-7570871 REVERSE LENGTH=1029	59%
RefSeq	Arabidopsis thaliana	NP_197667.1	DNA/RNA helicase protein RAD5 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002328182.1	chromatin remodeling complex subunit, partial [Populus trichocarpa]	71%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
162	66		33		0.997452
351		25		75	0.996473
363		25	75		0.996473
364	75	25			0.996473
367	75			25	0.996473
374	33		66		0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain