SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102738

Length: 816 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene102738

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH	-	-	4.0e-30	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Gene names
Sma3	AT4g22040; LOC_Os03g26290; LOC_Os03g61660; LOC_Os10g01750; LOC_Os12g05520; OSIGBa0134J07.9; OSJNBa0013O08.17; OSJNBa0065H03.10; OSJNBa0078D06.27; OSJNBb0034I13.10; Os01g0509800; Os10g0106900; T8L23.26; TnInt1; VITISV_002093; VITISV_005279; VITISV_008931;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
251	33		66		0.997452
266		33		66	0.997452
274		33		66	0.997452
291		66		33	0.997453
305	33			66	0.997453
312	33			66	0.997452
336	33		66		0.997454
338	33		66		0.997452
366		66		33	0.997452
390			75	25	0.996473
417		33		66	0.997452
438	25	75			0.996473
452	25		75		0.996473
511		66		33	0.997452
534	33		66		0.997476
540		80		20	0.995493
544	80			20	0.995496
548	80	20			0.995493
549		20	80		0.995493
561	25		75		0.996473
562	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain