SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102702

Length: 924 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene102702

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	metal ion transporter , putative [Medicago truncatula]	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	69%

Source	Gene names
Sma3	At2g04305; GSVIVT00005735001; MtrDRAFT_AC148396g29v2; Os08g0130000; OsI_27697; OsJ_25928; P0582D05.123; PHYPADRAFT_152552; PHYPADRAFT_185474; POPTRDRAFT_821328; POPTRDRAFT_843710; RCOM_0817990;

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G04305.1	Magnesium transporter CorA-like family protein chr2:1501679-1503448 REVERSE LENGTH=434	64%
RefSeq	Arabidopsis thaliana	NP_178511.2	Magnesium transporter CorA-like-like protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002300313.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9RX58

Fln msg: Distance to subject end: 158 aas, your sequence is shorter than subject: 274 - 423

Fln protein: MMPISLEETSTDAEEMDTEMAMESPIRQKQKYTIHFPGAVKRSAYRFDGQGNFFNKDWDLSEGEGGEFCWYHVELPRSNQRLAVSAQYLIDVLCPPLKLHDILSLVSSGPFCGNVDGALVFRVNSPGPTVSKFTQRLAARISENTVITVSLGKVPRLGFSPTGQSLLSEIPSVEGPPSQRHYGEKDEESSKQAQEPNGIVIREHVLEFLLTMNHSEEADNPVPTRVSNLLVHIVDTYVDHLQDIVTKLEMELDTIELELDKGGYLLKKQTLDDR

Protein Length: 275

Fln nts: GTTTTATATTGATTGAAATCTGTGACACCCAATTAGCATTTTGTTAGTTTTTTTGGATTGAAATTCAAACATACCCAATAAGGATTTTAGTTTTGAGGAGTC_-_ATGATGCCGATCAGTCTTGAAGAGACCAGCACTGATGCAGAGGAAATGGATACTGAAATGGCCATGGAGTCTCCAATTAGACAGAAACAGAAGTACACAATACATTTCCCTGGTGCAGTGAAGAGGAGTGCCTACAGATTTGATGGGCAAGGCAATTTCTTTAACAAGGATTGGGATCTGAGCGAAGGAGAGGGTGGGGAATTTTGTTGGTACCATGTTGAGCTGCCGAGATCTAATCAGAGACTGGCAGTGTCTGCACAATACTTGATTGATGTCCTCTGCCCCCCTCTGAAGCTTCACGATATCCTGTCCCTCGTGAGCAGTGGGCCCTTCTGTGGCAATGTCGATGGGGCTCTTGTGTTTAGGGTCAATTCCCCAGGTCCCACTGTCAGCAAATTTACGCAGAGGCTTGCCGCCAGGATCAGCGAGAATACTGTGATCACGGTATCTCTGGGCAAGGTGCCAAGGTTGGGATTTTCTCCGACGGGCCAGTCTCTGCTTTCTGAGATCCCTAGTGTGGAGGGTCCTCCATCTCAGCGCCATTATGGAGAAAAGGATGAGGAGAGCTCAAAACAAGCCCAAGAGCCCAATGGAATTGTCATCAGAGAGCATGTTCTGGAGTTTCTGTTGACTATGAATCATTCCGAGGAAGCCGATAACCCTGTGCCCACTAGAGTCTCCAATCTCCTTGTGCACATTGTGGACACCTATGTTGATCATCTGCAGGATATAGTAACCAAGCTTGAGATGGAGTTGGATACTATAGAGCTTGAATTGGATAAAGGTGGTTATTTATTGAAGAAGCAGACATTGGATGATAGG

Fln Alignment:

AllPine_a_c32411___SPIRQKQKYTIHFPGAVKRSAYRFDGQGNFFNKDWDLSEGEGGEFCWYHVELPRSNQRLAVSAQYLIDVLCPPLKLHDILSLVSSGPFCGNVDGALVFRVNSPGPTVSKFTQRLAARISENTVITVSLGKVPRLGFSPTGQSLLSEIPSVEGPPSQRHYGEKDEESSKQAQEPNGIVIREHVLEFLLTMNHSEEADNPVPTRVSNLLVHIVDTYVDHLQDIVTKLEMELDTIELELDKGGYLLKKQTLDDR
B9RX58________________TPLMGRPFYQSRFPGMVRQKAYIFDGDGNYYNKEWDLAEGRGNEFCWYHVELPKSNQKLSLSAQCLIDVLCPPLTLQDILTLVSNGPYCGFVDGALVFRVNSPGPPSSDFTFRLAARVTENSVITVSLGRVPRLGFSPMGQSLLSEIPSVETP---SYFGGEHKEQSR-------VVIKEHVLEFLLTMNHSEEADNPVPKSVSNLVVHIVDTHIDHLQDMVTKLEIELDSVELELDKGGFALKKQMLDDR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
581		80	20		0.995493
582	20			80	0.995493
584		80		20	0.995493
660		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain