SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102590

Length: 192 nt

UniGene Fasta

>sp_v3.0_unigene102590
TGATGGTCACGGCATGTGGTTGTTTAAATAGGATGAGGACGGGGGTATAACAAAAATTTGTTGTTGGAGATAGCTCAGAGAGCAGGAGCAGCACTGCCTGTGTATACTACTGTGCGTTCTGGTCTAGGTCATTTGCCCTATTTTACATGCACTGTGGAGTTAGCTGGGTTAAGCTATGCGGGTGAAAGGGCC

Ace file of the UniGene sp_v3.0_unigene102590

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata]	-	-	2.0e-11	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Double-stranded RNA binding protein	-	-	2.195e-12	-

Source	Gene names
Sma3	At2g28380; At3g26932; At5g41070; At5g41070/MEE6_14; DRB1502; DRB1503; DRB1504; GSVIVT00019816001; GSVIVT00024541001; GSVIVT00031077001; GSVIVT00037908001; LOC_Os10g33970; MA4_106O17.54; OSJNBa0093B11.1; Os05g0150400; Os10g0480500; OsDRB2; OsI_31979; OsI_3

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	0.0	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G26932.1	DRB3 dsRNA-binding protein 3 chr3:9930460-9931714 REVERSE LENGTH=359	2.0e-15	70%
RefSeq	Arabidopsis thaliana	NP_001030779.2	dsRNA-binding protein 3 [Arabidopsis thaliana]	3.0e-15	70%
RefSeq	Populus trichocarpa	XP_002328379.1	predicted protein [Populus trichocarpa]	4.0e-16	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM70

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 253 aas, your sequence is shorter than subject: 64 - 388

Fln protein: *WSRHVVV*IG*GRGYNKNLLLEIAQRAGAALPVYTTVRSGLGHLPYFTCTVELAGLSYAGERA

Protein Length: 65

Fln nts: TGATGGTCACGGCATGTGGTTGTTTAAATAGGATGAGGACGGGGGTATAACAAAAATTTGTTGTTGGAGATAGCTCAGAGAGCAGGAGCAGCACTGCCTGTGTATACTACTGTGCGTTCTGGTCTAGGTCATTTGCCCTATTTTACATGCACTGTGGAGTTAGCTGGGTTAAGCTATGCGGGTGAAAGGGCC

Fln Alignment:

AllPine_a_c32097___KNLLLEIAQRAGAALPVYTTVRSGLGHLPYFTCTVELAGLSYAGERA
B8LM70________________KNLLQEIAHRAGLSLPVYTTTRSGPAHLPVFKCIVDVFGTRFNGKPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain