SustainPineDB

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Assembly info
Unigenes
SNPs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102571

Length: 153 nt

UniGene Fasta

>sp_v3.0_unigene102571
CCCCTGGGGGCGACAAAGCGACGCCCCTACTGCGGGTCGAGATACAGTCGAAGAGTGACATGCACCGCTTCTAGCGTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGACACACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCG

Ace file of the UniGene sp_v3.0_unigene102571

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative senescence-associated protein (Fragment) n=1 Tax=Pisum sativum RepID=Q9AVH2_PEA	-	-	7.0e-08	96%
FL-Next	tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	90%
Sma3	Putative senescence-associated protein	-	-	1.227e-09	-

Source	Gene names
Sma3	ssa-13;

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: G7K0E2

Fln msg: Distance to subject end: 335 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 51 - 385

Fln protein: PLGATKRRPYCGSRYSRRVTCTASSVDSDLEAFSHNPTHGSFAPLAFQPSA

Protein Length: 52

Fln nts: CCCCTGGGGGCGACAAAGCGACGCCCCTACTGCGGGTCGAGATACAGTCGAAGAGTGACATGCACCGCTTCTAGCGTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGACACACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCG

Fln Alignment:

AllPine_a_c32021___TCTASSVDSDLEAFSHNPTHGSFAPLAFQPSA
G7K0E2________________TRIASSPDSDLEAFSHNPTHGSFAPLAFQPSA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
36	16		83		0.994512
87	11	88			0.924009

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain