SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102464

Length: 878 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene102464

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable pleiotropic drug resistance protein 1 n=6 Tax=Oryza sativa RepID=PDR1_ORYSJ	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Sma3	ATP-binding cassette transporter, putative	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	2.8026e-45	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	1.298e-10	-

Source	Gene names
Sma3	ABC1; At1g15210; At1g15520; At1g59870; At1g66950; At2g26910; At2g29940; At2g36380; At2g37280; At3g16340; At3g30842; At3g53480; At4g15215; At4g15220/At4g15230; At4g15233; At4g15236; B1045F02.15; B1090H08.39; CHLREDRAFT_115842; CHLREDRAFT_131711; CHLREDRAFT

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G15210.1	PDR7, ATPDR7 pleiotropic drug resistance 7 chr1:5231552-5236573 REVERSE LENGTH=1442	71%
RefSeq	Arabidopsis thaliana	NP_172973.1	ABC transporter G family member 35 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002304713.1	pleiotropic drug resistance protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: STOP codon was not found. Distance to subject end: 56 aas, your sequence is shorter than subject: 292 - 443

Fln protein: LKVRGGVNYNGHTMDEFVPQRTSAYISQNDLHIGEMTVRETLDFSARCQGVGSRYDVLTELLRREKDQGIKPDRDIDVFMKATALEGQKANLLTDYVLKILGLDICADTLVGDAMHRGISGGQKKRVTTGEMIVGAAKALFMDEISTGLDSATTYQIVRCLRQVVHVFNSTMVVSLLQPAPETFDLFDDVILLSEGHVIYQGPRENILEFFESMGFKCPERKGVADFLQEVTSLKDQEQYWADGRQTYRYVPVKEFADAFQSFHIGVALNAELSVPYDRKKCHPAALTTEEY

Protein Length: 293

Fln nts: CTGAAAGTTAGAGGTGGAGTAAACTACAATGGACATACCATGGATGAATTCGTGCCACAGAGAACATCCGCTTATATCAGTCAAAATGATTTGCACATTGGGGAAATGACTGTGAGAGAAACCTTAGACTTCTCTGCACGGTGCCAAGGAGTTGGGTCGAGATATGACGTATTAACTGAACTATTGAGGAGGGAAAAGGATCAGGGAATCAAACCAGATCGCGATATAGATGTCTTTATGAAGGCCACTGCATTAGAGGGCCAGAAAGCCAACCTGCTCACTGACTATGTTCTGAAGATCTTGGGGTTGGACATATGCGCGGACACACTGGTCGGAGATGCAATGCACAGGGGCATTTCCGGAGGGCAGAAGAAAAGAGTTACGACTGGGGAAATGATTGTTGGAGCTGCGAAAGCCCTTTTCATGGACGAGATTTCCACTGGTCTGGACAGTGCTACAACATACCAGATTGTTCGATGCCTACGCCAAGTTGTCCACGTTTTCAATTCGACGATGGTGGTGTCACTCCTCCAACCTGCCCCTGAGACCTTCGATCTCTTCGACGATGTCATTCTACTTTCAGAAGGTCATGTTATTTACCAGGGTCCTCGAGAAAACATACTCGAGTTTTTCGAGTCCATGGGATTTAAATGCCCTGAGAGGAAAGGTGTTGCAGATTTCTTGCAGGAGGTGACTTCTCTCAAAGATCAAGAGCAGTACTGGGCAGATGGAAGGCAAACATACCGTTATGTTCCAGTGAAGGAGTTTGCGGATGCATTCCAGTCTTTTCACATTGGGGTCGCATTGAATGCAGAGTTATCGGTTCCATACGATAGAAAGAAATGCCACCCGGCAGCTCTCACAACAGAGGAGTACGG

Fln Alignment:

AllPine_a_c31700___LKVRGGVNYNGHTMDEFVPQRTSAYISQNDLHIGEMTVRETLDFSARCQGVGSRYDVLTELLRREKDQGIKPDRDIDVFMKATALEGQKANLLTDYVLKILGLDICADTLVGDAMHRGISGGQKKRVTTGEMIVGAAKALFMDEISTGLDSATTYQIVRCLRQVVHVFNSTMVVSLLQPAPETFDLFDDVILLSEGHVIYQGPRENILEFFESMGFKCPERKGVADFLQEV
B8LN70________________LKVEGEVKYNGHALNEFVPERTSTYISQHDTHMGELTVRETLNFSARCQGVGSRYDVLTELSRREKQLGVKPDSDIDVFMKATAIEGQETSVMTDYVLKILGLDICADTMVGDSMRRGISGGQKKRVTTGEMMVGGAKVFLMDEISTGLDSSTTFQIVRCFSQFVHVMRTTMVISLLQPAPETFQLFDDVILLSEGYIVYQGPREYVLEFFENMGFKCPERKGVADFLQEV

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
142	66		33		0.997452
143	33	66			0.997452
144	33		66		0.997452
148		66	33		0.997452
149	33	66			0.997452
195	20		80		0.995493
196			80	20	0.995493
199	80			20	0.995493
232	87		12		0.992554
239	12			87	0.992554
241	12			87	0.992554
400	75		25		0.996473
475	20		80		0.995493
539		66	33		0.997452
601		20		80	0.995495
605		50		50	1.0
738		25		75	0.996473
739	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain