SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102288

Length: 757 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene102288

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Contains similarity to the KE03 protein gb\|AF064604 from Homo sapiens and to Ank repeat family PF\|00023 [Arabidopsis thaliana]	-	-	2.0e-32	35%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	50%
Sma3	Protein binding protein, putative	-	-	2.753e-07	-

Source	Gene names
Sma3	At1g04780; At1g04780/F13M7_20; At1g62050; At3g04470; At3g24210; F13M7.23; F25C20.11; F8K4.24; GSVIVT00006339001; GSVIVT00010983001; GSVIVT00032887001; OJ1112_G06.34; OSJNBb0041J06.101; OSJNBb0095H08.9; Os02g0810100; Os07g0436000; Os07g0436100; Os07g051210

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	apoplast	GO:0048046	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Copper amine oxidase	IPR000269	-	0.0	-
Sma3	Ankyrin repeat	IPR002110	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002299280.1	predicted protein [Populus trichocarpa]	3.00018e-42	50%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
322	87		12		0.992554
340	11			88	0.923564
344			11	88	0.991528
377	11		88		0.991528
379		88		11	0.991528
382		88	11		0.991528
383			11	88	0.991528
390	88		11		0.923564
398	90		10		0.90298
399		90		10	0.90298
400		90	10		0.90298
404	90			10	0.90298
405	90			10	0.90298
406	90		10		0.90298
411		90		10	0.902981
413	10	90			0.902981
540		14		85	0.993533
585	16		83		0.994512
660	16		83		0.994512
661		83		16	0.994512
664	16			83	0.994512
725	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain