SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102198

Length: 874 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene102198

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc transporter, putative n=1 Tax=Ricinus communis RepID=B9S9U8_RICCO	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Zinc transporter, putative	-	-	1.706e-16	-

Source	Gene names
Sma3	12.t00028; 12.t00049; At1g55910; At5g59520; F14J16.16; GSVIVT00024285001; GSVIVT00033348001; GSVIVT00033350001; GSVIVT00033352001; GSVIVT00033353001; LOC_Os03g29850; MtrDRAFT_AC157503g1v2; Os01g0972200; Os03g0411800; Os03g29850; OsI_05391; OsI_05394; OsI_

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transposase activity	GO:0004803	Molecular Function	-
Sma3	copper ion transmembrane transporter activity	GO:0005375	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	transposition, DNA-mediated	GO:0006313	Biological Process	-
Sma3	zinc ion transport	GO:0006829	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Transposase, IS4-like	IPR002559	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3	Domain of unknown function DUF1117	IPR010543	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55910.1	ZIP11 zinc transporter 11 precursor chr1:20906161-20907225 FORWARD LENGTH=326	53%
RefSeq	Arabidopsis thaliana	NP_564703.1	zinc transporter 11 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002300374.1	ZIP transporter [Populus trichocarpa]	59%

Full-Lengther Next Prediction

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
553	66	33			0.997452
555	66			33	0.997452
557			33	66	0.997452
558			66	33	0.997452
561		33		66	0.997452
562		33		66	0.997452
564	66			33	0.997452
565		66	33		0.997452
571		66	33		0.997452
574	33		66		0.997452
575	66	33			0.997452
577		33	66		0.997452
578	33		66		0.997452
612		83		16	0.994523
613	66		33		1.0
617	66		16		0.988813
619		83	16		0.994514
622		16		83	0.994515
624	20			80	0.995493
627			20	80	0.995493
629		20		80	0.995493
633	80	20			0.995493
635	80	20			0.995493
636			80	20	0.995493
637		20	80		0.995493
638	87	12			0.992555
639	87		12		0.992555
641	87	12			0.992555
642	87		12		0.992555
644	87		12		0.992555
645	12			87	0.992555
646	87	12			0.992555
648	87			12	0.992555
649	85			14	0.993533
650		85	14		0.993533
651		85	14		0.993533
653			85	14	0.993533
654		85	14		0.993533
655	85			14	0.993533
656	85	14			0.993533
658		14	85		0.993533
659		85		14	0.993533
661	14		85		0.993533
676		85	14		0.993533
702	85			14	0.993533
715		57	42		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain