SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102112

Length: 870 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene102112

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance-associated protein 1, 3 (Mrp1, 3), abc-transoprter, putative n=1 Tax=Ricinus communis RepID=B9RIN7_RICCO	-	-	0.0	54%
FL-Next	sp=ABC transporter C family member 10; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	Multidrug resistance protein ABC transporter family	-	-	5.238e-17	-

Source	Gene names
Sma3	At3g59140; F17J16.190; GSVIVT00002476001; GSVIVT00002478001; GSVIVT00002482001; GSVIVT00002485001; GSVIVT00002487001; GSVIVT00002490001; GSVIVT00006470001; GSVIVT00006491001; GSVIVT00034195001; LOC_Os11g05700; LOC_Os12g37580; MRP10; MRP14; MRP3; Os06g0158

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G59140.1	ATMRP14, MRP14, ABCC10 multidrug resistance-associated protein 14 chr3:21863519-21868701 REVERSE LENGTH=1453	55%
RefSeq	Arabidopsis thaliana	NP_191473.2	multidrug resistance-associated protein 14 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002318362.1	multidrug resistance protein ABC transporter family, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LYS2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 798 aas, your sequence is shorter than subject: 289 - 1453

Fln protein: VVTLAVTQMKLNRYIQPEKS*IIWR*MLVVLASFPFWFHQTWTTVLQLIFALGILFHAIGWATLSALAVIIITMLFNSPLAKLQHKFQTELMSAQDQRLRATTEALVHMKVLKLHAWEERFKEVSRSCAR*S*NGYLRFSFGKPTIRCCFGHLPFWFRLQLFITCYFLKIPLTPSNVFTFIATLRLVQEPIRLIPDVIVVIIQAKVSLSRIINFLEAAELQDRVVERVFLQNSDHSLLLSSATLSWDSSSSKPTLRNINMEVKHGQKLAICGEVGSGKSTLLAAILGEV

Protein Length: 290

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGAAGCTAAACAGGTACATACAGCCGGAGAAATCATGAATTATATGGCGGTAGATGCTTGTCGTATTGGCGTCGTTTCCTTTCTGGTTTCATCAGACTTGGACAACAGTACTCCAGCTTATATTTGCTTTAGGCATCCTCTTCCATGCAATTGGTTGGGCCACACTTTCAGCCTTGGCAGTTATCATCATTACCATGCTTTTTAATTCTCCATTGGCAAAGTTACAGCATAAGTTTCAAACTGAACTCATGTCAGCCCAGGATCAGCGGTTAAGGGCTACCACAGAAGCTCTGGTGCATATGAAAGTACTGAAATTGCATGCATGGGAGGAACGCTTCAAAGAAGTATCGAGAAGCTGCGCAAGGTAGAGTTAAAATGGCTATCTGCGGTTCAGTTTCGGAAAGCCTACAATTCGTTGTTGTTTTGGTCATCTCCCGTTTTGGTTTCGACTGCAACTATTTATAACCTGCTACTTTCTTAAAATTCCTCTTACTCCAAGCAACGTTTTCACGTTCATAGCCACTTTGCGCCTCGTTCAAGAACCAATTCGACTAATTCCTGATGTAATTGTTGTTATCATTCAAGCAAAGGTCTCATTAAGTCGTATCATCAACTTTCTTGAGGCTGCTGAATTACAGGATCGGGTGGTTGAGCGTGTATTTCTTCAGAACTCTGACCACTCTCTTCTTCTCAGTTCTGCAACACTAAGTTGGGATTCCAGTTCATCAAAGCCCACATTGAGAAACATAAATATGGAGGTTAAACATGGCCAAAAATTGGCAATTTGTGGAGAAGTTGGATCTGGAAAATCAACTCTTTTAGCTGCAATACTTGGAGAAGTACC

Fln Alignment:

AllPine_a_c30567___LASFPFWFHQTWTTVLQLIFALGILFHAIGWATLSALAVIIITMLFNSPLAKLQHKFQTELMSAQDQRLRATTEALVHMKVLKLHAWEERFKEVSRSCAR*S*NGYLRFSFGKPTIRCCFGHLPFWFRLQLFITCYFLKIPLTPSNVFTFIATLRLVQEPIRLIPDVIVVIIQAKVSLSRIINFLEAAELQ--DRVVERVFLQNXXXXXXXXXXXXXXXXXXXKPTLRNINMEVKHGQKLAICGEVGSGKSTLLAAILGE
Q9LYS2________________IGEFPYWFHQLWTTSFQLLIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAILGE

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
244		25		50	0.995533
268		20		80	0.995493
388		80		20	0.995493
412	80	20			0.995494
478		25		75	0.996476
479			25	75	0.996476
482	25		75		0.996473
483		25		75	0.996473
484		25		75	0.996473
486		83		16	0.994512
488	50		16	33	1.0
493		66	33		1.0
496	42	28		28	1.0
497		71		28	1.0
498	28			42	1.0
499	71		28		1.0
500			28	71	1.0
501		28		71	1.0
503	71		28		1.0
505	71	28			1.0
512	28			71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain