SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102073

Length: 616 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene102073 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ELF4-like protein n=1 Tax=Pinus taeda RepID=C6ZKI3_PINTA	-	-	9.99967e-42	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	EARLY flowering 4 protein	-	-	1.737e-18	-

Source	Gene names
Sma3	At1g72630; At2g06255; F28G4.6; F28P22.18; GSVIVT00016474001; LOC_Os03g29680; LOC_Os11g40610; OSJNBb0108E08.15; Os03g0410300; Os11g0621500; OsI_12004; OsI_36872; OsJ_11231; OsJ_34677; PHYPADRAFT_49622; POPTRDRAFT_574460; POPTRDRAFT_640610; POPTRDRAFT_81705

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1313	IPR009741	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G06255.1	ELF4-L3 ELF4-like 3 chr2:2459336-2459665 FORWARD LENGTH=109	6.0e-37	61%
RefSeq	Arabidopsis thaliana	NP_565334.1	protein ELF4-like 3 [Arabidopsis thaliana]	8.0e-37	61%
RefSeq	Populus trichocarpa	XP_002326278.1	predicted protein [Populus trichocarpa]	0.0	67%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
378		33		66	0.997452
471		75	25		0.996473
473	25			75	0.996473
475		75	25		0.996473
483		75		25	0.996473
488	75	25			0.996473
491	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain