SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102071

Length: 625 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene102071 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	helicase associated domain-containing protein [Arabidopsis thaliana] gb\|AEE33493.1\| helicase associated domain-containing protein [Arabidopsis thaliana]	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%

Source	Gene names
Sma3	At1g58050; At1g58060; B0308C03.3; GSVIVT00035406001; OSJNBa0084A10.14; Os04g0432200; OsI_15944; OsJ_14858; POPTRDRAFT_827443; RCOM_1374260; T15M6.6; T15M6.7; VITISV_002615;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G58060.1	RNA helicase family protein chr1:21489480-21501775 REVERSE LENGTH=1459	53%
RefSeq	Arabidopsis thaliana	NP_176103.2	helicase associated domain-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002328702.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
212	16			83	0.994512
214	16			83	0.994512
322	16		83		0.994512
323	83	16			0.994512
325			83	16	0.994512
344	75		25		0.996473
366		25		75	0.996473
367		25	75		0.996473
369	25	75			0.996473
471		33		66	0.997452
474			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain