SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101987

Length: 713 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene101987 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock 70 kDa protein n=3 Tax=rosids RepID=HSP70_SOYBN	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Sma3	Heat shock protein 70	-	-	-

Source	Gene names
Sma3	AT4g24280; AT4g37910; At1g56410; At4g24280; At4g37910; At5g09590; At5g28540; At5g42020; At5g49910; BIP; BIP1; BIP2; BIP4; BIP5; BIPE2; BIPE3; BLP4; BiP; BiPD; Bip; CHLREDRAFT_126835; CHLREDRAFT_133650; CHLREDRAFT_133859; CHLREDRAFT_137452; CHLREDRAFT_1856

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	cyanelle	GO:0009842	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to virus	GO:0009615	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Chaperone DnaK	IPR012725	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G56410.1	ERD2, HSP70T-1 heat shock protein 70 (Hsp 70) family protein chr1:21117147-21119241 FORWARD LENGTH=617	75%
RefSeq	Arabidopsis thaliana	NP_176036.1	heat shock protein-70 cognate protein [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002332589.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
138			14	85	0.993533
139	85		14		0.993533
140	85			14	0.993533
150	62	37			1.0
165		11	88		0.923564
170		88	11		0.923564
191	87		12		0.992554
237	87		12		0.992554
239	85		14		0.993533
240	85			14	0.993533
241		85	14		0.993533
242	14	85			0.993533
246	28	14	57		1.0
247		14		85	0.993533
249	14			85	0.993533
251	85		14		0.993533
254	14			85	0.993533
257	14		85		0.993533
259	85		14		0.993533
283	85		14		0.993533
284		85		14	0.993533
291		85		14	0.993533
316		25		75	0.99649
324		33		66	0.997452
334	50		50		1.0
387	83		16		0.994513
393		83		16	0.994512
394		66		33	1.0
403		16		83	0.994512
417			60	40	1.0
442		83		16	0.994512
502			83	16	0.994512
508			66	33	1.0
519		83	16		0.994512
520		16		83	0.994512
533	40	60			1.0
545	80		20		0.995493
554		33		66	0.997457
563	66		33		0.997452
605	66		33		0.997461
609	66		33		0.997453
649			33	66	0.997467
651		66		33	0.997471
652		66		33	0.997471
654	33	33		33	0.997752

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain