SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101972

Length: 911 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene101972

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP-binding protein n=5 Tax=Arabidopsis RepID=Q9FFE6_ARATH	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	AMP dependent ligase, putative	-	-	1.157e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	o-succinylbenzoate--CoA ligase.	EC:6.2.1.26	-	1.499e-24	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.499e-24	%
Sma3	Metabolic pathways	01100	1.499e-24	%
Sma3	Biosynthesis of secondary metabolites	01110	1.499e-24	%

Source	Gene names
Sma3	ACLL10; ACLL3; ACLL4; ACLL5; ACLL6; ACLL7; ACLL8; ACLL9; AMPBP1; AMPBP10; AMPBP2; AMPBP4; AMPBP5; AMPBP6; AMPBP7; AMPBP8; AMPBP9; At1g20560; At1g21530; At1g21540; At1g65880; At1g65890; At1g66120; At1g68270; At1g75960; At1g76290; At1g77240; At2g17650; At3g

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	acetate-CoA ligase activity	GO:0003987	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	benzoate-CoA ligase activity	GO:0018858	Molecular Function	-
Sma3	acetate metabolic process	GO:0006083	Biological Process	-
Sma3	glyoxylate cycle	GO:0006097	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	glucosinolate biosynthetic process	GO:0019761	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G16340.1	AMP-dependent synthetase and ligase family protein chr5:5349255-5350907 REVERSE LENGTH=550	55%
RefSeq	Arabidopsis thaliana	NP_197138.1	AMP-binding protein 6 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002329170.1	acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM6

Fln msg: Distance to subject end: 261 aas, your sequence is shorter than subject: 292 - 569

Fln protein: MEKLTRCAANHPPLSPIRFIERAAIVYGDSTSVVYNSTRYTWSHTYQRCRRLASALCAHNILPGDVVSVVAPNIPAIYEMHFAVPMAGAVLNTVNTRLDARTMAAQFNHCQPKIVFADYQFVPLVTEALRRTNHKPTLVIIQELVNGREIAPTSTAIATTYEGLLQEGDPEFETRWPEDEWQGIVVNYTSGTTSAPKGVVHSHRGIYSMVMDTLLTWGMKSRPVYLWTLPMFHSNGWSFPWGIAALGGTNICLRKFDGHIIYKALNDHQVTHLCAAPVVLTMIANEIHPRDL

Protein Length: 293

Fln nts: AATGTAGACTTTGCGAAGGAAAGACGCAGAGAAA_-_ATGGAGAAATTGACACGATGTGCTGCGAATCATCCTCCCCTGTCACCGATCCGCTTCATAGAGAGAGCTGCCATCGTCTATGGGGACTCCACCTCTGTCGTCTACAATTCCACTCGTTATACGTGGTCTCACACCTACCAACGCTGCCGCAGGCTCGCCTCTGCTCTCTGTGCCCACAATATCTTGCCTGGGGATGTGGTCTCTGTGGTGGCTCCCAACATTCCTGCCATTTACGAAATGCATTTCGCAGTTCCAATGGCGGGGGCCGTTCTTAACACCGTCAACACGCGTCTGGATGCTCGAACTATGGCCGCTCAATTCAATCACTGTCAGCCCAAGATTGTGTTTGCAGATTACCAATTTGTGCCTCTCGTAACGGAAGCTCTACGCAGGACGAACCATAAGCCCACCCTGGTAATCATCCAGGAGCTCGTCAATGGCAGAGAAATAGCTCCGACGAGTACAGCAATAGCCACAACGTACGAAGGGCTATTGCAAGAGGGAGATCCCGAGTTCGAGACACGGTGGCCGGAGGACGAATGGCAGGGTATCGTTGTGAATTATACGTCGGGCACAACCTCTGCTCCCAAGGGAGTAGTCCACAGCCACAGGGGAATCTACTCTATGGTTATGGATACTCTGTTAACGTGGGGTATGAAGTCACGGCCTGTTTATCTGTGGACTCTCCCCATGTTTCACTCTAATGGCTGGTCTTTCCCATGGGGAATAGCTGCCCTCGGCGGCACAAATATCTGCTTAAGGAAATTCGACGGCCACATCATCTATAAAGCCCTCAACGACCACCAGGTCACCCATCTCTGCGCCGCGCCTGTGGTGCTTACCATGATTGCAAACGAGATCCATCCGAGAGACCTCC

Fln Alignment:

AllPine_a_c30069___DAEKMEKLTRCAANHPPLSPIRFIERAAIVYGDSTSVVYNSTRYTWSHTYQRCRRLASALCAHNILPGDVVSVVAPNIPAIYEMHFAVPMAGAVLNTVNTRLDARTMAAQFNHCQPKIVFADYQFVPLVTEALRRTNHK-------PTLVII-QELVNGREIAPTSTAIATTYEGLLQEGDPEFETRWPEDEWQGIVVNYTSGTTSAPKGVVHSHRGIYSMVMDTLLTWGMKSRPVYLWTLPMFHSNGWSFPWGIAALGGTNICLRKFDGHIIYKALNDHQVTHLCAAPVVLTMIAN
A9NWM6________________EVKDIDDLPKCPANYTALTPLWFIQRAALVYPKRKSVIHGARQYTWDQTYERCRRLASALAKRSIGPGTTVGVLAPNIPAAYEAHFGIPMAGAVLNSINIRLDARTIAFLLEHSRAVAVLVDQDFFMLLQEALGLMAKKHGSGFEPPFLVVIGDETCDEGNLKRALRSGAVEYEDFLQEGDPGFEWQPPDDEWQSIALGYTSGTTSSPKGVVLSHRGAYVASLGAALAWEMKGSGVYLWTLPMFHCNGWCYAWGMAAFCGTNICLRQVTARAIYASIAEHKVTHFCAAPVVLNTVVN

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
647	12	87			0.992554
648	87			12	0.992554
650			87	12	0.992554
678		85	14		0.993533
689	14		71		0.984337
742	14	85			0.993533
743		14		85	0.993533
745	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain