SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101886

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene101886
CGGGAAGAAGGAACCGTTGGTGCAGACTGATCCTCCTTCAATTTTTGTTGTTGCAGATCTTTTCCCTTCTGAAGACTTTCCAGAGGGCGAAATTCAGCATTACAAGGAAGATAATCTTTGGAGAGAAACATCGGAGGAGAAGCGCAACCAGGAAAGATTGGAAAAGCCCATCTACAATGCTGTGCGTCAGGCTGCGGAGGTGCATCGACAGGTACGAAAATATATCAGGAATTATGTAAAACCGGGAA

Ace file of the UniGene sp_v3.0_unigene101886

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methionine aminopeptidase n=1 Tax=Picea sitchensis RepID=D5ABX5_PICSI	-	-	1.0e-34	92%
FL-Next	sp=Methionine aminopeptidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Methionine aminopeptidase	-	-	1.956e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Methionyl aminopeptidase.	EC:3.4.11.18	-	4.11e-37	-

Source	Gene names
Sma3	At2g44180; At3g59990; CHLREDRAFT_206042; F24G16.26; F6E13.31; GSVIVT00026216001; LOC_Os12g43370; MAP2; MAP2A; MAP2B; MICPUCDRAFT_38437; MICPUN_96898; OJ1211_G06.29; OJ1521_G02.7; OSTLU_48274; Os08g0542000; Os12g0628500; OsI_30097; OsI_39210; OsJ_28135; Os

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	metalloexopeptidase activity	GO:0008235	Molecular Function	-
Sma3	cobalt ion binding	GO:0050897	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	protein processing	GO:0016485	Biological Process	-
Sma3	N-terminal protein amino acid modification	GO:0031365	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Peptidase M24, methionine aminopeptidase	IPR001714	-	-
Sma3	Peptidase M24A, methionine aminopeptidase, subfamily 2	IPR002468	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site	IPR018349	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G59990.1	MAP2B methionine aminopeptidase 2B chr3:22155921-22158551 REVERSE LENGTH=439	6.0e-35	76%
RefSeq	Arabidopsis thaliana	NP_850725.1	methionine aminopeptidase 2B [Arabidopsis thaliana]	8.0e-35	76%
RefSeq	Populus trichocarpa	XP_002305888.1	predicted protein [Populus trichocarpa]	2.0e-35	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABX5

Fln msg: Distance to subject end: 288 aas, your sequence is shorter than subject: 82 - 476

Fln protein: GKKEPLVQTDPPSIFVVADLFPSEDFPEGEIQHYKEDNLWRETSEEKRNQERLEKPIYNAVRQAAEVHRQVRKYIRNYVKPG

Protein Length: 83

Fln nts: CGGGAAGAAGGAACCGTTGGTGCAGACTGATCCTCCTTCAATTTTTGTTGTTGCAGATCTTTTCCCTTCTGAAGACTTTCCAGAGGGCGAAATTCAGCATTACAAGGAAGATAATCTTTGGAGAGAAACATCGGAGGAGAAGCGCAACCAGGAAAGATTGGAAAAGCCCATCTACAATGCTGTGCGTCAGGCTGCGGAGGTGCATCGACAGGTACGAAAATATATCAGGAATTATGTAAAACCGGGAA

Fln Alignment:

AllPine_a_c29823___KKEPLVQTDPPSIFVVADLFPSEDFPEGEIQHYKEDNLWRETSEEKRNQERLEKPIYNAVRQAAEVHRQVRKYIRNYVKPG
D5ABX5________________KKEPLGQTDPPSI-PVADLFPSEDFLEGEIQQYKEDNLWRETSEEKREQERLEKPIYNAVRQAAEVHRQVRKYIRNYVKPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain