SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101829

Length: 1069 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene101829

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class I peptide chain release factor [Arabidopsis thaliana] ref\|NP_001077761.1\| Class I peptide chain release factor [Arabidopsis thaliana] gb\|AAO22610.1\| unknown protein [Arabidopsis thaliana] gb\|AAO42344.1\| unknown protein [Arabidopsis thaliana] gb\|AEE3	-	-	4.00001e-40	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Immature colon carcinoma transcript, putative	-	-	3.343e-09	-

Source	Gene names
Sma3	At1g62855; GSVIVT00007252001; GSVIVT00010320001; LOC_Os03g14510; MICPUCDRAFT_9338; MICPUN_103717; OSTLU_7434; Os03g0249200; OsI_10760; OsJ_10143; Ot14g03070; PHYPADRAFT_98884; POPTRDRAFT_646490; POPTRDRAFT_671184; RCOM_1680630; RCOM_1684650; RCOM_2106210;

Source	GOs	Term	Type	Identity
Sma3	translation release factor activity	GO:0003747	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	translational termination	GO:0006415	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptide chain release factor class I/class II	IPR000352	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G62850.2	Class I peptide chain release factor chr1:23272608-23274211 REVERSE LENGTH=236	3.00018e-42	76%
RefSeq	Arabidopsis thaliana	NP_001077761.1	Class I peptide chain release factor [Arabidopsis thaliana]	3.99931e-42	76%
RefSeq	Populus trichocarpa	XP_002304436.1	predicted protein [Populus trichocarpa]	0.0	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMX9

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 38 aas, your sequence is shorter than subject: 196 - 237

Fln protein: MVAMLKLTVRKCTVFFPGINYFSKMGPILSHHNSFSSTIQNMMGKFLQLGTRAGNMDYRVQCMSSKSGADGRMSARLMQMQQVLEEAESRAVHANEPIPxxHVTVGFARSGGPGGQNVNKVDTKVDMRFNVMAAGWLPLRIRERILQMEKNRINKDGEIIMSSTKSRTQKGNIEDALGKLQAIIDAAAYVPPSPTE

Protein Length: 197

Fln nts: ATGGGGGAGCACCTGAAAGTGATAATATTGCTGAACCACAAGAGTTGAATTACTTCACAAGGGCCGTGGGAGTTTATGGAACCGGAGTGTAAAACTAGATGCCAAGCGGTCTTACCCGCCAAATTCTTTTGGATTGCTCACTTCTTTCATCATATAGTCCAGGTTCTTTCATTTTCCATTTTGGTACCGTTGAAGAGCTGCGGTTTGCTGTGAAGTTATATTATCTTTCCGATTTGACACGCGGGTAATTTCATTAATCCTTTTGGTGCCGTCGAAGAGCTGCTTTTGCTGCGAAGTTACATGATCATTCCGATTTGGAGCACTGGGCTGGTAAGTTTCCAAGCAAGTCTGCAGATCGTGGCTACTATTGGAAGACTAAGTGGAAATCAACTAAGAGAAATCGGCATGATCCTAAATGGTTTTGTAACTAAAGTGACTATGCATTGATTGATTCAAAGTTTCTAGCATCTATAAGCCTCTAT_-_ATGGTGGCTATGCTGAAGTTGACAGTCAGAAAATGCACCGTTTTCTTCCCAGGGATAAACTATTTCTCAAAAATGGGGCCCATCCTTTCTCATCATAATAGTTTTTCCTCCACCATCCAAAATATGATGGGAAAATTCTTACAATTGGGAACACGAGCAGGAAATATGGATTACAGGGTACAATGCATGAGTTCGAAGTCAGGGGCTGATGGAAGGATGTCTGCCAGGCTAATGCAGATGCAGCAGGTCCTCGAGGAAGCTGAGTCTCGAGCTGTTCATGCAAATGAGCCAATTCCAxxxxxxCATGTGACAGTTGGCTTTGCAAGAAGTGGAGGACCTGGAGGACAAAATGTCAATAAAGTGGACACCAAGGTTGATATGCGATTCAATGTTATGGCTGCTGGTTGGCTTCCCCTGCGAATTAGAGAAAGAATATTGCAAATGGAAAAGAATCGAATAAACAAGGATGGAGAAATCATTATGTCATCCACCAAAAGTCGGACCCAAAAGGGAAATATTGAGGATGCTTTGGGAAAACTTCAGGCAATAATTGATGCTGCTGCTTATGTTCCACCATCTCCAACAGAA

Fln Alignment:

AllPine_a_c29673___VAMLKLTVRKCTVFFPGINYFSKMGPILSHHNSFSSTIQNMMGKFLQLGTRA-GNMDYRVQCMSSKSGADGRMSARLMQMQQVLEEAESRAVHANEPIPKxxxEHVTVGFARSGGPGGQNVNKVDTKVDMRFNVMAAGWLPLRIRERILQMEKNRINKDGEIIMSSTKSRTQKGNIEDALGKLQAIIDAAAYVPPSPTE
A9NMX9________________MALLKLTVRRCTVFFSTINHFSKMGPIFSHHNSFSSTTQNMMRIFLRSGTRLEGNMDYRVHCMSSKSGAEGRMSARLVQMQQVLEEAESRAVHANEPIPKxxxEHVTVGFARSGGPGGQNVNKVNTKVDMRFNVMAADWIPLRIRERILQMEKNRINRDGEIVMSSTKSRTQKGNIEDALGKLQAIIDAAAYVPPPPTD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
786	66			33	0.997453
788	33	66			0.997452
789	66	33			0.997452
791		33	66		0.997452
799			66	33	0.997452
800			33	66	0.997452
803	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain