SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101766

Length: 255 nt

UniGene Fasta

>sp_v3.0_unigene101766
CGTCGTGACCTTGGCTGTCACTCATCAAAATAACTATAATGTATATAGCTTTGGGGGAAAGAAAAGTTTGGTACTTTCCACCACAAGTTGGCTTGGAGGGAAAAATGATTTCATGGGGAAGATTTACGTTGTCACTGGGGCATTATGCATCTTTTTGGCATTGGTTTTCTTCATTTTGCATATTAAAGTTAAATACCCGAGGTACGCCTCTATAATTTGATGAAGAAATTTACATTCGTTTGCTTGCCTTGAAAC

Ace file of the UniGene sp_v3.0_unigene101766

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[DKT] COG5035 Cell cycle control protein	-	-	7.0e-08	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Cell division control protein 50	-	-	1.968e-12	-

Source	Gene names
Sma3	ALIS1; ALIS3; ALIS4; ALIS5; At1g16360; At1g54320; At1g79450; At3g12740; F20D21.14; F20D21_50; F3O9.16; GSVIVT00002097001; GSVIVT00010564001; GSVIVT00023466001; GSVIVT00028338001; LOC_Os03g02830; Lj-CDC50 like 1; MBK21.12; OJ1065_E04.29; OSJNBa0073A21.17;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SWAP/Surp	IPR000061	-	0.0	-
Sma3	Protein of unknown function DUF284, transmembrane eukaryotic	IPR005045	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16360.1	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein chr1:5593493-5595179 REVERSE LENGTH=336	1.0e-20	61%
RefSeq	Arabidopsis thaliana	NP_173086.2	putative ALA-interacting subunit 4 [Arabidopsis thaliana]	1.0e-20	61%
RefSeq	Populus trichocarpa	XP_002327453.1	predicted protein [Populus trichocarpa]	9.0e-22	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU40

Fln msg: your sequence is shorter than subject: 73 - 340

Fln protein: VVTLAVTHQNNYNVYSFGGKKSLVLSTTSWLGGKNDFMGKIYVVTGALCIFLALVFFILHIKVKYPRYASII*

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCAAAATAACTATAATGTATATAGCTTTGGGGGAAAGAAAAGTTTGGTACTTTCCACCACAAGTTGGCTTGGAGGGAAAAATGATTTCATGGGGAAGATTTACGTTGTCACTGGGGCATTATGCATCTTTTTGGCATTGGTTTTCTTCATTTTGCATATTAAAGTTAAATACCCGAGGTACGCCTCTATAATTTGA___TGAAGAAATTTACATTCGTTTGCTTGCCTTGAAAC

Fln Alignment:

AllPine_a_c29515___LAVTHQNNYNVYSFGGKKSLVLSTTSWLGGKNDFMGKIYVVTGALCIFLALVFFILHIKVKYPRY
A9NU40________________ITVEIQNNYNVYSFGGKKSLVLSTTSWLGGKNDFMGKIYIVVGALCIFLAMVFFILHIKFRHPRH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain