SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101686

Length: 1636 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene101686

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[I] COG3675 Predicted lipase	-	-	3.0e-07	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G51440.1	alpha/beta-Hydrolases superfamily protein chr1:19070971-19072554 FORWARD LENGTH=527	60%
RefSeq	Arabidopsis thaliana	NP_564590.1	phospholipase A1-Igamma3 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002313345.1	predicted protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKE3

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 21 aas, your sequence is shorter than subject: 483 - 554

Fln protein: NRFRNPTHWHPDLTDMKRRALPIRNAGMESLTTTLEAVDIEEKKEPKISKASKPKRNLEDIWREIQGANNWEGLLDPMDGILRKEIIRYGEFAQACYDAFDFDPFSKYCGSCKYHRRDLFQGVEMSDYGYEVTKYLYATSNINLPGLFQKPRVQKLWSTHANWMGFIAVATDEDEIKRLGRRDIVIAWRGTVTNLEWIADLMDYLRPAELNNLHPHPDVKVEAGFLNLYTAREHDCRFCKSSARDQVLSELRRLLQKYRGEKLSITITGHSLGSALAMLSAYDIAELGLNRSGNNDQAVSIPIAVFSFAGPRVGNAAFKDRCEQLGLKFLRVVNVHDCVPKVPGILFNEKLQMMKQWVDKLPWRYCHVGVELALDHTRSPFLKPTNDLSCFHNLEAHLHLLDGYHGQGERFYLTSRRDPALVNKSCDFLKEHHMVPPFWWQDANKGLIKNSEGRWVQPERIRYIDEPHTADTDEQEEIDLRS*

Protein Length: 484

Fln nts: TTAATCGTTTCAGGAACCCTACTCATTGGCATCCTGACCTGACAGACATGAAAAGAAGGGCGCTGCCCATCAGAAATGCGGGAATGGAGTCCCTGACGACCACGCTCGAGGCAGTAGACATCGAAGAGAAGAAGGAGCCAAAGATCTCCAAGGCGTCGAAGCCCAAGAGGAATCTGGAAGATATATGGAGGGAAATCCAAGGCGCCAACAACTGGGAAGGGCTGCTTGATCCCATGGACGGCATACTGCGAAAGGAGATCATCAGATACGGAGAGTTTGCCCAGGCCTGTTATGATGCTTTCGATTTCGATCCCTTCTCCAAGTACTGTGGTAGCTGCAAGTATCATCGCAGGGATCTCTTCCAAGGCGTTGAGATGTCGGATTACGGCTACGAAGTGACCAAGTATCTCTATGCCACTTCCAACATCAATCTGCCTGGTCTTTTCCAAAAGCCTCGCGTGCAGAAGCTGTGGAGTACTCACGCCAACTGGATGGGCTTCATAGCCGTGGCCACGGACGAGGATGAGATCAAAAGGCTCGGACGGCGAGATATCGTGATCGCGTGGAGAGGAACTGTGACGAATCTGGAGTGGATCGCGGACCTCATGGATTATCTGAGGCCTGCGGAATTGAACAACCTGCATCCCCATCCTGACGTGAAGGTGGAGGCGGGATTCCTGAATCTGTATACTGCCAGGGAACACGACTGCCGGTTTTGTAAAAGTAGCGCACGGGATCAAGTCCTGTCGGAGTTGAGGCGTCTGTTGCAGAAATACAGAGGCGAGAAGTTGAGCATAACGATCACCGGTCACAGTCTTGGGAGCGCTCTGGCGATGCTGAGCGCGTACGACATCGCAGAGTTGGGATTGAACCGCTCGGGGAACAACGACCAGGCGGTGTCGATTCCCATAGCGGTGTTCTCGTTCGCGGGGCCAAGGGTGGGCAACGCTGCTTTCAAGGATCGGTGCGAACAGCTGGGGCTCAAATTTCTGAGAGTGGTGAATGTGCACGACTGCGTGCCTAAGGTCCCCGGGATTCTGTTCAATGAAAAGCTGCAGATGATGAAACAGTGGGTGGATAAGCTTCCGTGGAGGTACTGTCATGTCGGGGTGGAGCTGGCTCTAGATCACACCCGTTCTCCTTTCTTAAAGCCCACTAACGACCTCTCCTGCTTTCATAATCTGGAGGCCCATCTACACCTCCTGGACGGATACCATGGGCAGGGTGAACGCTTCTATCTCACGTCGAGGCGAGATCCGGCTTTGGTAAATAAGTCGTGTGATTTTCTGAAGGAGCACCACATGGTCCCTCCCTTCTGGTGGCAGGACGCAAACAAAGGACTGATCAAGAACTCGGAGGGCAGGTGGGTCCAGCCTGAGAGGATCAGATACATTGACGAACCCCATACAGCTGATACGGATGAGCAGGAGGAGATAGATCTAAGGAGTTAG___CCGGGAGAGGGCAGACGCTGCCCAGCCCGCGAAAGGAGATGCCATGTTAATTACATAGTGCAAAAAACATTTAGAAAAGGTCAAGTATATATTAGTTCTTTTAAAAATTTCTTATTATATAAAATTTATTATGAACCTTCAACCAGATTCCAGGTGATTCCGATCAATCCCCATCATACCAAAAG

Fln Alignment:

AllPine_a_c29344___RNPTHWHPDLTDMKRRALPIRN--AGMESLTTTLEAVDIEEKKEPKISKASKPKRNLEDIWREIQGANNWEGLLDPMDGILRKEIIRYGEFAQACYDAFDFDPFSKYCGSCKYHRRDLFQGVEMSDYGYEVTKYLYATSNINLPGLFQKPRVQKLWSTHANWMGFIAVATDEDEIKRLGRRDIVIAWRGTVTNLEWIADLMDYLRPAELNNLHPHPDVKVEAGFLNLYTAREHDCRFCKSSARDQVLSELRRLLQKYRGEKLSITITGHSLGSALAMLSAYDIAELGLNRSGNNDQAVSIPIAVFSFAGPRVGNAAFKDRCEQLGLKFLRVVNVHDCVPKVPGILFNEKLQMMKQWVDKLPWRYCHVGVELALDHTRSPFLKPTNDLSCFHNLEAHLHLLDGYHGQGERFYLTSRRDPALVNKSCDFLKEHHMVPPFWWQDANKGLIKNSEGRWVQPERIRYIDEPHTADTDEQEEI
B8LKE3________________RKPHNGPSLMKAMKERALPVRNSAAQTEFLSNTLDALDVQESTEPKISEASKPERNLEDIWREIQGANNWEGLLDPMDGILRKEIIRYGEFAQACYDGFDFDPFSKYCGSCKYHRRELFQGVGMSDYGYEVTKYLYATSNINLTGLFQKPRVQKMWSTHANWMGFIAVATDEEEIKRLGRRDIVIAWRGTVTYLEWIADLMDYLRPAELNYVHPHPDVKIESGFLSLYTARERDCRFCKSSARDQVLSELRRLLQKYKGEQLSITITGHSLGSALAMLSAYDIAELGLNQSESDDRAESIPITVFSFAGPRVGNAAFKDRCEELGLKFLRVVNVHDIVPKVPGILFNETFKMMKQWIDKLPWSYCHVGVKLVLDHTQSPFLKPTNDSSCFHNLEAHLHLLDGYHGRGQRFCLTSRRDPALVNKSCDFLKEHHLVPPFWRQDANKGLIQNSEGRWVQPERIRIIEESH-MDPDHHETV

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
501	66		33		0.997452
503	66		33		0.997452
692			50	50	1.0
713	33		66		0.997452
725		50		50	1.0
793			66	33	0.997452
806		66	33		1.0
815		33		66	1.0
818			40	60	1.0
824		60		40	1.0
830		40	60		1.0
833	20		60	20	0.99255
842		60		40	1.0
845	40		60		1.0
860	40		60		1.0
861	40			60	1.0
866	60		40		1.0
869			60	40	1.0
874	40		60		1.0
875	40	60			1.0
877		80		20	0.995493
880	40		60		1.0
883	60		40		1.0
885	60		40		1.0
886	80		20		0.995493
890		60		40	1.0
891		60	40		1.0
893	20		80		0.995493
895	20	80			0.995493
898	50			50	1.0
904		50		50	1.0
908		75		25	0.996474
912	50		50		1.0
935	80		20		0.995493
944		83		16	0.994512
950	16			83	0.994512
953	14			85	0.993533
965	14		85		0.993533
968		85		14	0.993533
971	85		14		0.993533
972		85	14		0.993533
980	14		85		0.993533
986	85		14		0.993533
1014	50			50	1.0
1022			14	85	0.993533
1031		85	14		0.993533
1059	83	16			0.994512
1064		14	85		0.993533
1190		66	33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain