SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101595

Length: 512 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene101595
GCAACATGCTTGGCAAAGGAGGATTCGGCGATGTCTATAAGACTTCCTGATGGAAGGGATGTTGCGGTCAAGAGACTGAATGGAAGGCATGAGAATACTGAAGGCGCGGAGGAGTTCCTGACAGAAGTGAACCTCCTGGCCAGCGTCCGTCACCGCAATCTTGTTCGTCTACTCGGATGTTGCACGCGTGGGAACCAACGCTTGCTGGTTTACAAATATATGTCAAATAATGGTCTTCACAAGCATTTGTTTGGAGAGATGCGAAATGGTCTAAACTGGGAAAACCGTGTAGACATTATAGTGGGCACAGCTCGAGGTCTGTCATATCTGCACGAGGACTCGAACATGCGCATTATACATAGAGATATCAAATGCGCAAATATACTGTTAGATGACAGATTTCACCCTAAAATAGCAGATTTTGGAATGGCAAGATTCTTCCCAGAAGGTGAAAGCCATCTTTCTACCAGAGTTGGGGGAACAATAGGCTACACCGCACCAGAGTATGCCGT

Ace file of the UniGene sp_v3.0_unigene101595 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os04g0658700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0J9E3_ORYSJ	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Putative Receptor-like serine/threonine kinase(RFK1)	-	-	1.772e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	1.7e-08	-

Source	Gene names
Sma3	24K23.9; AT1G56145; AT4g21390; AT4g27300; Ark1; At1g16670; At1g56145; At1g61610; At1g65790; At1g65800; At1g70520; At1g70530; At4g21390; At4g27300; At5g40380; B0808H03.2; BRLK; BcRK1; BcRK3; BcRK6; BnSRK-6; CRK2; CRK3; CRK42; F14G9.24; F19K19.4; F24J13.10;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G09010.1	Protein kinase superfamily protein chr3:2750285-2752086 FORWARD LENGTH=393	53%
RefSeq	Arabidopsis thaliana	NP_566341.1	protein kinase domain-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002324661.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPW7

Fln msg: Distance to subject end: 162 aas, your sequence is shorter than subject: 170 - 702

Fln protein: ATCLAKEDSAMSIRLPDGRDVAVKRLNGRHENTEGAEEFLTEVNLLASVRHRNLVRLLGCCTRGNQRLLVYKYMSNNGLHKHLFGEMRNGLNWENRVDIIVGTARGLSYLHEDSNMRIIHRDIKCANILLDDRFHPKIADFGMARFFPEGESHLSTRVGGTIGYTAPEYA

Protein Length: 171

Fln nts: GCAACATGCTTGGCAAAGGAGGATTCGGCGATGTCTATAAGACTTCCTGATGGAAGGGATGTTGCGGTCAAGAGACTGAATGGAAGGCATGAGAATACTGAAGGCGCGGAGGAGTTCCTGACAGAAGTGAACCTCCTGGCCAGCGTCCGTCACCGCAATCTTGTTCGTCTACTCGGATGTTGCACGCGTGGGAACCAACGCTTGCTGGTTTACAAATATATGTCAAATAATGGTCTTCACAAGCATTTGTTTGGAGAGATGCGAAATGGTCTAAACTGGGAAAACCGTGTAGACATTATAGTGGGCACAGCTCGAGGTCTGTCATATCTGCACGAGGACTCGAACATGCGCATTATACATAGAGATATCAAATGCGCAAATATACTGTTAGATGACAGATTTCACCCTAAAATAGCAGATTTTGGAATGGCAAGATTCTTCCCAGAAGGTGAAAGCCATCTTTCTACCAGAGTTGGGGGAACAATAGGCTACACCGCACCAGAGTATGCCGT

Fln Alignment:

AllPine_a_c29090___LPDGRDVAVKRLNGRHENTEGAE-EFLTEVNLLASVRHRNLVRLLGCCTRGNQRLLVYKYMSNNGLHKHLFGEM-RNGLNWENRVDIIVGTARGLSYLHEDSNMRIIHRDIKCANILLDDRFHPKIADFGMARFFPEGESHLSTRVGGTIGYTAPEYA
C0PPW7________________LPDGREVAVKRL---FMGTRQADAEFLNEANLISRVQHRNLVKLLGCSVEVSERLLVYEYLQNSSLDKILFDPTKRHLLDWKKRSEIILGTARGLAYLHEESDVRVIHRDIKASNILLDDKHRPKIADFGLARFFAEDQSHVSTRVAGTLGYMAPEYA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
245	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain