SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101569

Length: 1276 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene101569

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SY02.1\|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb\|AAD15348.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB77760.1\| hypothetical protein	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Pentatricopeptide, putative, expressed	-	-	8.005e-15	-

Source	Gene names
Sma3	57h21.3; At1g09410; At1g25360; At1g53600; At1g56690; At2g13600; At2g22070; At3g13770; At3g24000; At4g02750; At4g13650; At4g14820; At4g16835; At5g66520; B1080A02.28; DYW10; F14J9.7; F14O13.19; F18A5.40; F22G10.27; F25P12.87; F4F7.25; FCAALL.115; FCAALL.441

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein of unknown function DUF1635	IPR012862	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	49%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002310520.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Separated hits, possible frame ERROR between 374 and 410, Unexpected STOP codon at 3' end. Distance to subject end: 65 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 343 - 370

Fln protein: MEHAHHMFDRMPDRDVFSWTTMISGYFQSYRIDEACCLFERMPNQDVVSWTAMISGYEQTKQGEEALRLFVQMQRTGMKPIQPIFTVxxxxxxxxxxxxxGQQVHAHIVKSEFELDVCVNNSIIAMYGKCGSMGDAGQVFDKMPERDVVSWNSLIVGFAQHGHGKVVLELIEQFEQTGLEPNGITFLGVLSACSHAGLVNEGWQYFNSMIREYCITPRADHYACMVDLLARAGLLNEALDFIHKMPFKPHAAVWGALLGSCKIHSNVDLGKYAAEQLFELEPQNATSYVVLSNMYALAGRWDDEAKIRTMKKEKMVSKVPGYSWIEIHNRVHTFIAGDILHP*

Protein Length: 344

Fln nts: CAGCAAACGTCAGTGAAACCAAATCTGTGTACTTTAACCAGTGGGGTAAACGCCTGTGCCAGTTTTGCGATACTAGAGCATGGATATCAGGACATACTCAAAATGGGAGG_-_ATGGAACATGCTCACCATATGTTCGACAGAATGCCTGATCGAGATGTATTTTCATGGACTACCATGATTTCAGGATATTTTCAGAGTTACAGGATAGATGAAGCATGCTGCCTGTTTGAGAGGATGCCTAACCAGGATGTTGTCTCGTGGACTGCAATGATTTCAGGATATGAGCAGACCAAGCAGGGCGAGGAAGCTCTTAGACTTTTTGTCCAAATGCAACGCACAGGCATGAAGCCAATTCAGCCAATTTTTACAGTGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGGCCAGCAGGTGCATGCTCATATTGTAAAATCAGAATTTGAGCTGGATGTCTGTGTTAATAATTCCATTATTGCAATGTATGGTAAATGCGGAAGCATGGGGGATGCTGGCCAGGTTTTTGACAAAATGCCTGAGAGAGATGTAGTGTCATGGAATTCACTAATTGTAGGATTTGCCCAGCATGGGCATGGGAAGGTGGTGCTCGAACTCATAGAGCAATTTGAACAAACAGGCTTGGAACCCAATGGCATTACCTTTCTGGGTGTATTGTCTGCGTGTTCTCATGCAGGACTAGTGAACGAAGGCTGGCAGTACTTTAATTCCATGATTCGAGAATATTGCATTACACCAAGAGCTGATCACTATGCTTGTATGGTGGATCTTCTTGCCCGTGCAGGACTTCTAAATGAGGCCTTGGATTTCATCCACAAGATGCCATTCAAACCCCATGCTGCTGTGTGGGGTGCCCTGCTTGGTTCCTGCAAAATCCATTCAAATGTGGATCTTGGTAAGTATGCAGCAGAACAACTTTTTGAGTTGGAACCACAAAATGCTACATCATATGTGGTGCTGTCAAATATGTATGCATTAGCTGGTAGGTGGGACGATGAAGCAAAGATAAGAACAATGAAGAAAGAGAAAATGGTCAGTAAAGTCCCCGGTTACAGCTGGATTGAGATACACAACAGAGTTCACACATTTATAGCCGGTGATATATTGCACCCTTAGATAGAGGAGATCTATGCAATGTAGAGATATTGACTCTGGAAAAAAACAAGGCAGGCTGTATACTCAACTGAAACTGTATCCTGCAAGATGTTTACCAGAACGTACATGATGACAAAGCCGCACACTGAACAACCTTTA

Fln Alignment:

AllPine_a_c28994___DVFSWTTMISGYFQSYRIDEACCLFERMPNQDVVSWTAMISGYEQTKQGEEALRLFVQMQRTGMKPIQPIFTVLxxxxxxxxxxxxGQQVHAHIVKSEFELDVCVNNSIIAMYGKCGSMGDAGQVFDKMPERDVVSWNSLIVGFAQHGHGKVVLELIEQFEQTGLEPNGITFLGVLSACSHAGLVNEGWQYFNSMIREYCITPRADHYACMVDLLARAGLLNEALDFIHKMPFKPHAAVWGALLGSCKIHSNVDLGKYAAEQLFELEPQNATSYVVLSNMYALAGRWDDEAKIRTMKKEKMVSKVPGYSWIEIHNRVHTFIAGDILHP*IEEIY
A9P0W0________________DVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVxxxxxxxxxxxxGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain