SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101478

Length: 568 nt

UniGene Fasta

>sp_v3.0_unigene101478
ATGGGGGGATTTGCTTTCCCAAAAGGATCCCAGCTAGCGATTGACTTTTCAACAGCAATCCTGACCCTTTCAGAGACCGGCGAGCTTCAGAGAATTCATGATAAATGGTTGAGTCAAAATAATTGTGGTTCACAAGCCAATCAAGTTGATTCGACTCAGCTTCACCTGAAAAGCTTTTGGGGTCTTTTCTTGATCATTGGCGTGGCATCGTTTGCTTCCCTTGTTGCATTTTTAGGTCGTGCAATCTGGCAATTTATCCAGCACTTTCAGGAAAAAGACACTGGAGATGAGTCTACTTCTGTTTCCAAGTCATTCCCATCAAATAGTGCACGTATACTGCGATCATTTATTGATTTTATTGATGAGAAAGAGATTAGTAAAAGAAGAAAAAGTTCAACAGATAATTCTGAAACAAGCCAACAGAGAACTTGACTTGATTCTAGCAGCTAGTCATTGCTCCAAGCAATCTTGGAGCTTCTCTAGTTATCTATCCATTTGATCTACGAATTCCATGATTATTCATTCTATGTATTACTGTTAATCTCATAATTATTTAACATAGAACATT

Ace file of the UniGene sp_v3.0_unigene101478

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor n=2 Tax=Selaginella moellendorffii RepID=D8QYE9_SELML	-	-	2.0e-26	48%
FL-Next	sp=Glutamate receptor 3.2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Sma3	Glutamate-gated kainate-type ion channel receptor subunit GluR5	-	-	6.032e-11	-

Source	Gene names
Sma3	ACL1; At1g42540; At2g17260; At4g35290; F23E12.150; GLR2; GLR3.1; GLR3.2; GLR3.3; GLUR2; GSVIVT00026034001; PHYPADRAFT_125910; PHYPADRAFT_196025; POPTRDRAFT_412085; POPTRDRAFT_552797; POPTRDRAFT_775020; POPTRDRAFT_803968; T8D8.1; VITISV_021644;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	G-protein coupled receptor activity	GO:0004930	Molecular Function	-
Sma3	G-protein coupled GABA receptor activity	GO:0004965	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	ion transport	GO:0006811	Biological Process	-
Sma3	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G35290.2	GLUR2, GLR3.2, ATGLR3.2, ATGLUR2 glutamate receptor 2 chr4:16790290-16793461 FORWARD LENGTH=912	5.0e-29	46%
RefSeq	Arabidopsis thaliana	NP_974686.1	glutamate receptor 3.2 [Arabidopsis thaliana]	7.0e-29	46%
RefSeq	Populus trichocarpa	XP_002321123.1	glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa]	2.0e-29	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q93YT1

Fln msg: your sequence is shorter than subject: 144 - 912

Fln protein: MGGFAFPKGSQLAIDFSTAILTLSETGELQRIHDKWLSQNNCGSQANQVDSTQLHLKSFWGLFLIIGVASFASLVAFLGRAIWQFIQHFQEKDTGDESTSVSKSFPSNSARILRSFIDFIDEKEISKRRKSSTDNSETSQQRT*

Protein Length: 145

Fln nts: ATGGGGGGATTTGCTTTCCCAAAAGGATCCCAGCTAGCGATTGACTTTTCAACAGCAATCCTGACCCTTTCAGAGACCGGCGAGCTTCAGAGAATTCATGATAAATGGTTGAGTCAAAATAATTGTGGTTCACAAGCCAATCAAGTTGATTCGACTCAGCTTCACCTGAAAAGCTTTTGGGGTCTTTTCTTGATCATTGGCGTGGCATCGTTTGCTTCCCTTGTTGCATTTTTAGGTCGTGCAATCTGGCAATTTATCCAGCACTTTCAGGAAAAAGACACTGGAGATGAGTCTACTTCTGTTTCCAAGTCATTCCCATCAAATAGTGCACGTATACTGCGATCATTTATTGATTTTATTGATGAGAAAGAGATTAGTAAAAGAAGAAAAAGTTCAACAGATAATTCTGAAACAAGCCAACAGAGAACTTGA___CTTGATTCTAGCAGCTAGTCATTGCTCCAAGCAATCTTGGAGCTTCTCTAGTTATCTATCCATTTGATCTACGAATTCCATGATTATTCATTCTATGTATTACTGTTAATCTCATAATTATTTAACATAGAACATT

Fln Alignment:

AllPine_a_c28696___GFAFPKGSQLAIDFSTAILTLSETGELQRIHDKWLSQNNCGSQANQV---DSTQLHLKSFWGLFLIIGVASFASLVAFLGRAIWQFIQHFQEKDTGDESTSVSKSFPSNSARILRSFIDFIDEKE-ISKRRKSSTDNSETS
Q93YT1________________GFAFPRDSPLAIDMSTAILGLSETGQLQKIHDKWLSRSNCSNLNGSVSDEDSEQLKLRSFWGLFLVCGISCFIALFIYFFKIVRDFFRHGKY----DEEATV-PSPESSRSKSLQTFLAYFDEKEDESKRRMKRKRNDDLS

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
17	25			75	0.99649
18		75		25	0.996486
19		75	25		0.996474
20		75	25		0.996474
21	75		25		0.996474
24	75		25		0.996474
52	80			20	0.995493
59	75		25		0.996473
79		80		20	0.995493
80		60		40	1.0
125		16		83	0.994513
236	20			80	0.995493
238			16	83	0.994513
239	83		16		0.994512
387	66	33			0.997467
444			33	66	0.997453
465		33	33		0.997753

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain