SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101446

Length: 602 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene101446

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	major facilitator protein [Arabidopsis thaliana] gb\|AAL31925.1\|AF419593_1 At2g39210/T16B24.15 [Arabidopsis thaliana] gb\|AAC28987.1\| nodulin-like protein [Arabidopsis thaliana] gb\|AEC09646.1\| major facilitator protein [Arabidopsis thaliana]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Sma3	Nodulin family protein, putative, expressed	-	-	4.031e-17	-

Source	Gene names
Sma3	At2g28120; At2g28120/F24D13.9; At2g39210; GSVIVT00000612001; GSVIVT00012484001; GSVIVT00012949001; GSVIVT00018121001; GSVIVT00018122001; GSVIVT00018125001; GSVIVT00018126001; GSVIVT00018127001; GSVIVT00022162001; LOC_Os03g47810; LOC_Os03g58580; LOC_Os10g0

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39210.1	Major facilitator superfamily protein chr2:16366287-16368231 REVERSE LENGTH=601	60%
RefSeq	Arabidopsis thaliana	NP_181454.1	major facilitator protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002331452.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
158	75		25		0.996479
159	33		33	33	0.997753
161			33	66	1.0
166		83	16		0.994514
171	66		16		0.988813
172	16		83		0.994514
173		16		66	0.988813
174		16	83		0.994514
175		20		80	0.995493
177	16		33	50	1.0
178			80	20	0.995493
180	20			80	0.995493
181	40	20	40		1.0
194		20		80	0.995493
225	80		20		0.995493
242			33	66	1.0
271			83	16	0.994513
332		12	87		0.992558
334			87	12	0.99256
349	14		85		0.993533
357		37	62		1.0
422			14	85	0.993541
438		16		83	0.994512
450			83	16	0.994513
453		83		16	0.994513
455			83	16	0.994513
466	80	20			0.995493
474		20		80	0.995493
480		80		20	0.995493
532	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain