SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101396

Length: 586 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene101396

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin responsive GH3-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZF61_PICSI	-	-	0.0	85%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	0.0	71%
Sma3	GH3 family protein	-	-	6.888e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	1.177e-24	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		1.177e-24	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		1.177e-24	%

Source	Gene names
Sma3	At1g28130; At1g59500; At1g59500 orthologue; At2g14960; At2g23170; At2g47750; At4g27260; At5g13320; At5g54510; B1070A12.26; DFL1; F13K9.22; F17A22.14; F24B18.13; F3H9.21; F3H9_19; GH3; GH3-1; GH3-2; GH3-3; GH3-4; GH3-5; GH3-6; GH3-7; GH3-8; GH3-9; GH3.1; G

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	auxin homeostasis	GO:0010252	Biological Process	-
Sma3	detection of fungus	GO:0016046	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GH3 auxin-responsive promoter	IPR004993	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G54510.1	GH3.6, DFL1 Auxin-responsive GH3 family protein chr5:22131321-22133564 REVERSE LENGTH=612	71%
RefSeq	Arabidopsis thaliana	NP_200262.1	indole-3-acetic acid-amido synthetase GH3.6 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002319260.1	GH3 family protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
59	50	25	25		0.995571
60	25		75		0.996481
61		75		25	0.996481
62	50	50			1.0
63			80	20	0.995499
65			40	60	1.0
66	75		25		0.996473
68	50	25		25	0.995533
69			80	20	0.995496
71		25	25	50	0.995533
72	25	50	25		0.995533
75		75	25		0.996473
76	75			25	0.996473
78		25		75	0.996473
79	25			75	0.996473
81			75	25	0.996473
82		25	75		0.996473
83	20			80	0.995505
99		20		80	0.995493
147	20		80		0.995493
159	14	14		71	0.984347
160	85		14		0.993535
164			85	14	0.993535
165		85	14		0.993539
166	14	85			0.993539
175	85			14	0.993541
176	85	14			0.993541
178		16		83	0.994512
180	83	16			0.994512
181	16		83		0.994512
189	83		16		0.994512
269		83		16	0.994512
305	50	50			1.0
354		20	80		0.995493
357		80		20	0.995493
378	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain