SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101394

Length: 868 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene101394

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hcr2-5D n=1 Tax=Solanum lycopersicum RepID=Q9ZTJ6_SOLLC	-	-	2.0e-35	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Separated hits, possible frame ERROR between 343 and 390, Distance to subject end: 153 aas, your sequence is shorter than subject: 289 - 818

Fln protein: GKLHSLKKLYLFANNLSGCIPNNIGKLKALTQLGIFNTSVSGTIPGSISGLVSLQKLYLSGNRIEGPIPDDIGKCVALEHLVLSSNKLNGTMPSSLSNCTSLQRLKVSDNLLSxxxxxxxxxxxxxxxxxHSNNFSGTLPASLAKCTKLQLLDVRHNGLTGELPYYLAYFDQLRVLSAGYNKFHGAIPQWFTHLTKLQVLDLSSNSFIGGIPFNLERLQGFKINASSRVLGNKLYEDFIVVIKSHEYSLSYLLETNTILDLSNNNLNGEIPISIGNLSSLRLLNLSGNQ

Protein Length: 290

Fln nts: AGGGAAGCTTCATTCCCTGAAAAAGTTGTATTTGTTTGCCAACAATTTAAGTGGATGTATTCCAAATAACATTGGGAAGCTGAAGGCACTCACTCAATTGGGCATATTTAATACCAGTGTTTCTGGCACTATTCCTGGAAGTATCAGTGGTTTAGTTTCGCTTCAGAAATTATATTTATCTGGAAACCGCATTGAGGGACCAATTCCAGATGATATTGGTAAATGTGTTGCACTAGAGCACTTAGTATTGTCAAGTAACAAGTTGAATGGAACGATGCCCTCGTCTCTAAGTAATTGTACTTCTTTGCAAAGATTGAAGGTGTCAGATAACTTGCTCAGTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCATTCTAATAACTTTTCTGGGACCTTACCAGCATCTTTGGCCAAGTGTACTAAACTTCAATTGTTAGATGTAAGGCATAATGGATTGACAGGTGAGCTTCCTTATTACCTTGCCTATTTTGATCAGTTAAGAGTTTTAAGTGCTGGTTATAATAAGTTCCATGGTGCAATTCCTCAATGGTTTACACATCTCACCAAGTTGCAAGTGTTGGATCTTTCCAGTAATAGTTTCATTGGAGGAATACCATTCAATCTTGAGAGACTCCAAGGATTCAAAATCAATGCATCTTCTAGAGTCTTAGGCAATAAGCTATATGAAGACTTCATTGTTGTCATAAAATCGCATGAATATTCCCTCAGTTATTTGTTGGAGACAAATACAATACTTGACTTGTCCAACAATAACCTTAATGGTGAAATTCCTATAAGCATAGGAAATTTGAGTAGTTTGCGATTACTGAATTTATCTGGGAACCAATT

Fln Alignment:

AllPine_a_c28347___GKLHSLKKLYLFANNLSGCIPNNIGKLKALTQLGIFNT-----SVSGTIPGSISGLVSLQKLYLSGNRIEGPIPDDIGKCVALEHLVLSSNKLNGTMPSSLSNCTSLQRLKVSDNLLSGxxxxxxxxxxxxxxxxHSNNFSGTLPASLAKCTKLQLLDVRHNGLTGELPYYLAYFDQLRVLSAGYNKFHGAIPQWFTHLTKLQVLDLSSNSFIGGIPFNLERLQGFKINASSRVLGNKLYEDFIVVIKSHEYSLSYLLETNTILDLSNNNLNGEIP
B8LQX6________________GNCSSLENLFLGDNRLSGNIPSQFGSLRELFQLSIYGPEYVKGSISGSIPSEIGNCSSLVWLDFGNNRVQGSVPMSIFR-LPLSTLSLGKNYLTGSIPEAIGNLSQLTSLSLHQNNFTGxxxxxxxxxxxxxxxxNQNNFTGGIPEVIDNFSQLQLLDLSKNGFTGQIPGYLASLQELRVLSVAYNKLHGDIPASITNLTQLQVLDLSNNRISGRIPRDLERLQGFKILASSKLSSNTLYEDLDIVIKGFEYTLTYVLATNTIFDLSSNNLTGEIP

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
445		66		33	0.997452
448	66		33		0.997452
503		33		66	0.998869
519		66		33	0.997452
534	75		25		0.996473
536		25		75	0.996473
539			25	75	0.996473
579	75		25		0.996473
602	25		75		0.996473
629			33	66	0.997452
645		83		16	0.994512
647	83			16	0.994512
649		80		20	0.995493
653	80		20		0.995493
656			80	20	0.995493
657	80		20		0.995493
660		80		20	0.995493
662	80	20			0.995493
663	80		20		0.995493
676	80	20			0.995493
677	60		40		1.0
679	20		80		0.995493
680		80	20		0.995493
688	75	25			0.996473
689	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain