SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101224

Length: 419 nt

UniGene Fasta

>sp_v3.0_unigene101224
CGTCGTGACCTTGGCTGTCACTCATGGTTTTTGCTTTGTTATGTTTTACTCCAGAGAAGATACTGAGGATGCTGTAAAATATATAAGTGGTACAGTTCTTGATGATCGTAGTATCCGTGTTGACTTTGACTGGGGATTTCAAGAAGGCAGGCAATGGGGTCGTGGAAGAAGTGGAGGGCAGGTCCGGGATGAGTACCGTACAGATTATGATCCTGCTAGAGGAGGATTTGGAAAAGTTGTGCAGAAAGACCTGGAAATTCATAGACCGCCTATAGAACCAGTGGGCTCTTTCCATACAGGCGGCTCAAATTCTGCACTGGTCGGAGCTACAGCCTTGACTTCCACCATTCTGCTTCTAGCGCAAGGTCAAACGTTCGAATACCCACGAGTCGCTACAATGTCTCATCTTTCCGCGGCTT

Ace file of the UniGene sp_v3.0_unigene101224

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nuclear cap-binding protein subunit 2 n=2 Tax=Arabidopsis RepID=NCBP2_ARATH	-	-	2.0e-27	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Nuclear cap-binding protein	-	-	4.509e-11	-

Source	Gene names
Sma3	At5g44200; CBP20; CHLREDRAFT_169371; CPB20; GSVIVT00018636001; MICPUCDRAFT_8712; MICPUN_73957; OJ1004_A05.24; OSTLU_43898; Os02g0612300; OsI_08043; OsJ_07502; Ot14g01120; PHATR_13520; POPTRDRAFT_718232; POPTRDRAFT_836651; RCOM_1172990; cbp20;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mRNA cap binding complex	GO:0005845	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	RNA cap binding	GO:0000339	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	RNA splicing, via endonucleolytic cleavage and ligation	GO:0000394	Biological Process	-
Sma3	base-excision repair	GO:0006284	Biological Process	-
Sma3	primary miRNA processing	GO:0031053	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-hairpin-helix motif	IPR000445	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, conserved site-2	IPR004036	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G44200.1	CBP20, ATCBP20 CAP-binding protein 20 chr5:17802062-17803875 REVERSE LENGTH=257	2.0e-35	85%
RefSeq	Arabidopsis thaliana	NP_199233.1	nuclear cap-binding protein subunit 2 [Arabidopsis thaliana]	3.0e-35	85%
RefSeq	Populus trichocarpa	XP_002309756.1	predicted protein [Populus trichocarpa]	6.0e-34	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZD8

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 139 - 235

Fln protein: VVTLAVTHGFCFVMFYSREDTEDAVKYISGTVLDDRSIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPARGGFGKVVQKDLEIHRPPIEPVGSFHTGGSNSALVGATALTSTILLLAQGQTFEYPRVATMSHLSAA

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTTTTGCTTTGTTATGTTTTACTCCAGAGAAGATACTGAGGATGCTGTAAAATATATAAGTGGTACAGTTCTTGATGATCGTAGTATCCGTGTTGACTTTGACTGGGGATTTCAAGAAGGCAGGCAATGGGGTCGTGGAAGAAGTGGAGGGCAGGTCCGGGATGAGTACCGTACAGATTATGATCCTGCTAGAGGAGGATTTGGAAAAGTTGTGCAGAAAGACCTGGAAATTCATAGACCGCCTATAGAACCAGTGGGCTCTTTCCATACAGGCGGCTCAAATTCTGCACTGGTCGGAGCTACAGCCTTGACTTCCACCATTCTGCTTCTAGCGCAAGGTCAAACGTTCGAATACCCACGAGTCGCTACAATGTCTCATCTTTCCGCGGCTT

Fln Alignment:

AllPine_a_c27680___GFCFVMFYSREDTEDAVKYISGTVLDDRSIRVDFDWGFXXXXXXXXXXXXXXVRDEYRTDYDPARGGFGKVVQKDLEIHRPPIEPVGSFHTGGSNS
A9NZD8________________GFCFVLFYSREDTEDAVKYISGTILDDRSIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPARGGFGKVVQKDLEVHRPPIEPVGSFHSGSSNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain