SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101179

Length: 286 nt

UniGene Fasta

>sp_v3.0_unigene101179
AATGTAAATAATTTGGCGGAACTTTGGTCCTTGCTCATCTCAAGGGTATGGGCATGCATGGGCCCTTTTTAGTAGTTGCTCCTCTTTCAACTCTCTCGAATTGTGTGAATGAAATCAATAGGTTTGTTCCAAGCATGAATGCTATAATCTATCATGGCTCCAAAATTGAGCGACAAGAGCTGAGGAAAATCCACATGCCTCCCACAGTGGGCCCAACATTCCCTGTTATTGTCACTTCTTATGAGGTTGCAATGAATGATAGCAAGGCTTTGGCTCGCTATGATTG

Ace file of the UniGene sp_v3.0_unigene101179

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Decrease in DNA methylation 1 n=1 Tax=Brassica rapa RepID=B2DC40_BRACM	-	-	4.0e-28	70%
FL-Next	sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	SWI2/SNF2-like protein	-	-	2.195e-12	-

Source	Gene names
Sma3	CHR1530; CHR3504; CHR904; CHR905; DDM1; DDM1b; GSVIVT00024954001; LOC_Os03g51230; MICPUN_58978; OSTLU_37662; Os03g0722400; Os09g0442700; OsDDM1a; OsDDM1b; OsI_13335; OsI_31541; OsJ_12393; OsJ_29535; Ot17g01970; P0046G12.27; PHYPADRAFT_210776; POPTRDRAFT_2

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66750.1	DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 chromatin remodeling 1 chr5:26649050-26652869 FORWARD LENGTH=764	4.0e-34	67%
RefSeq	Arabidopsis thaliana	NP_201476.1	chromatin remodeling 1 [Arabidopsis thaliana]	5.0e-34	67%
RefSeq	Populus trichocarpa	XP_002310223.1	chromatin remodeling complex subunit [Populus trichocarpa]	1.0e-32	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XFH4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 438 aas, your sequence is shorter than subject: 94 - 764

Fln protein: CK*FGGTLVLAHLKGMGMHGPFLVVAPLSTLSNCVNEINRFVPSMNAIIYHGSKIERQELRKIHMPPTVGPTFPVIVTSYEVAMNDSKALARYD

Protein Length: 95

Fln nts: AATGTAAATAATTTGGCGGAACTTTGGTCCTTGCTCATCTCAAGGGTATGGGCATGCATGGGCCCTTTTTAGTAGTTGCTCCTCTTTCAACTCTCTCGAATTGTGTGAATGAAATCAATAGGTTTGTTCCAAGCATGAATGCTATAATCTATCATGGCTCCAAAATTGAGCGACAAGAGCTGAGGAAAATCCACATGCCTCCCACAGTGGGCCCAACATTCCCTGTTATTGTCACTTCTTATGAGGTTGCAATGAATGATAGCAAGGCTTTGGCTCGCTATGATTG

Fln Alignment:

AllPine_a_c27567___LAHLKGMGMHGPFLVVAPLSTLSNCVNEINRFVPSMNAIIYHGSKIERQELRKIHMPPTVGPTFPVIVTSYEVAMNDSKALARY
Q9XFH4________________LSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain