SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101132

Length: 893 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene101132

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, subfamily I, member 14, ABC component protein PpABCI14 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SBN5_PHYPA	-	-	3.0e-15	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	Gene names
Sma3	AT1G19800; At1g19800; F6F9.15; GSVIVT00033530001; OSIGBa0143N19.6; OSJNBa0010H02.13; Os04g0553000; OsI_16916; PHYPADRAFT_127149; POPTRDRAFT_411553; PtrTGD1; RCOM_0927080; at1g19800; ppabci14;

Source	GOs	Term	Type	Identity
Sma3	chloroplast inner membrane	GO:0009706	Cellular Component	-
Sma3	chloroplast outer membrane	GO:0009707	Cellular Component	-
Sma3	lipid transporter activity	GO:0005319	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	lipid transport	GO:0006869	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Permease domain	IPR003453	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19800.2	-	7.0e-16	60%
RefSeq	Arabidopsis thaliana	NP_973868.1	trigalactosyldiacylglycerol 1 [Arabidopsis thaliana]	9.0e-16	60%
RefSeq	Populus trichocarpa	XP_002303003.1	ABC transporter family protein, partial [Populus trichocarpa]	1.0e-17	63%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXM7

Fln msg: Distance to subject end: 204 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 227 - 462

Fln protein: MDLWAHTYWIRPGVHQSYSPHRTLYSHSRSGIGIEIGFCGPLRPSFSGKVDLVINPLPGFYSGCGLRSPNGMGFKGMRSGFVPGRFWLNSYSIKGLDRQFYLNSYPLNLASKAREVHVMQHTFPHGNTVLKLKHHVCRGKSLAAIDESVCHPQRKESGDFVDQDVGSSILQGWTPPRYVWRALAAWMIAGQVIARVLKGKIHSKNVFQQLEVVGPGSTGVCLLTAAF

Protein Length: 228

Fln nts: GACGAGCTCATGGCTGCAGCCTCCGCTTCCGCTCATTTGCAAGCCAATTTGGAGCAGGAGAAGAAATTTAGTGCTCGAGGGACTTCAAAAACCGTCCCTTCTTCTAGATAAGTAAACGAATAGCCTTAGTTATTTTGCGCAGGCTTGCATGCATTTTTATCTGTGATTGGCGTTGTAATGCCAAATTATTGCCAATGAGCTTTAGCTGAAC_-_ATGGACCTTTGGGCACACACGTATTGGATTCGCCCTGGTGTCCATCAATCTTATAGCCCGCATCGAACATTGTACAGTCACTCTAGATCGGGAATTGGGATTGAAATTGGCTTCTGTGGCCCCTTACGGCCGTCGTTCTCTGGTAAGGTCGATCTGGTAATAAATCCTTTACCGGGGTTTTATTCCGGTTGTGGTCTGCGAAGCCCTAATGGCATGGGTTTCAAAGGAATGAGGTCAGGTTTTGTACCTGGGCGATTTTGGCTAAATAGCTACTCCATTAAAGGGTTGGACCGGCAATTTTACCTGAATAGCTATCCTCTAAACCTGGCATCTAAGGCTAGGGAAGTCCATGTCATGCAGCACACATTTCCACATGGAAATACGGTACTTAAACTAAAACATCATGTCTGCAGGGGTAAATCTTTGGCAGCAATTGATGAATCTGTTTGCCATCCACAACGTAAGGAATCTGGAGATTTTGTAGATCAAGATGTAGGGAGTTCAATTCTGCAGGGCTGGACACCACCCAGATATGTGTGGAGAGCTCTGGCCGCGTGGATGATAGCAGGTCAGGTGATTGCCAGGGTTTTAAAGGGCAAAATCCATTCGAAAAATGTTTTCCAGCAGCTTGAGGTGGTTGGGCCTGGTTCCACTGGAGTTTGCTTGCTGACAGCTGCATTTG

Fln Alignment:

AllPine_a_c27431___LWAHT-YWIRPGVHQSYSPHRTLYSHSRSGIGIEIGFCGPLRPSFSGKVDLVINPLPGFYSGCGLRSPNGMGFKGMRSGFVPGRFWLNSYSIKGL-----DRQFYLNSYPLNLASKAREVHVMQHTFPHGNTVLKLKHHVCRGKSLAAIDESVCHPQRKESGDFVDQDVGSSILQGWTPPRYVWRALAAWMIAGQVIARVLKGKIHSKNVFQQLEVVGPGSTGVCLLTAAF
A9NXM7________________IWASSRYRISLGAHQSYCPQQALYS-PRLGCATENGFCGPMRRSFSGEVDRVLNSLPGFYSGCGLRSPNGMGFKGTRSGFAPGRLWPDSYSIKGMRLAAIPRRFYPFSYPLNLTSKPKEVHAMQHTFPNGNIVLKIKHFICRGKASAGIDDSVFHLQGKESGGFVDQEVVGSILKGWTPPRYVWRALAAWVIAGQVIARVFKGKIHTRNTLQQLEVVGPGSSGVCLLTAAF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
614			33	66	0.997452
623	20	80			0.995493
627			60	40	1.0
634			40	60	1.0
648			16	83	0.994512
649			83	16	0.994512
674	50		50		1.0
690		16		16	0.98884
691	16			83	0.994517

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain