SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101080

Length: 436 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene101080
AAGCCTATCATAACATTGTATCAGACATATATATAAAGTATCTGGCCTAGTAAATATTTTAATCCTCCTCTGCTCGGTTTGATATATTGCAGTACTCAAATTCCTCCGTTGAAATGGTGGAGGGAGAGCTTTGTGCAGATGGGCTTCCAGGTCAATGGAGTTCTGCAGACAAGACTCCCTCGGAACATTTAGATATTTCTCATGTTGATGACTATGGGGTGTCACCATATGAGTTAGACAAGCGTATACGTGATCTATTAGAGAAACAACAAGAAGAAAAGATTTCAGAGCTTGAGGTGGAGCTGAAGTCAACTGAGATTAAGCTACACGCTAAAGAAAGAGAACTTCAACATTGGAAGGAACGAGTTCGATGTCTTGCTGAGCTTTCATTTGGGCCAATTCAGGCATTTCCTCTCTCATTCATTATGCTCTTTTA

Ace file of the UniGene sp_v3.0_unigene101080 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WRKY family transcription factor [Arabidopsis thaliana] gb\|AAQ65182.1\| At4g31805 [Arabidopsis thaliana] dbj\|BAE99346.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE85962.1\| WRKY family transcription factor [Arabidopsis thaliana]	-	-	3.0e-08	47%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	45%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31805.1	WRKY family transcription factor chr4:15385454-15386775 FORWARD LENGTH=344	2.0e-11	47%
RefSeq	Arabidopsis thaliana	NP_567883.1	WRKY family transcription factor [Arabidopsis thaliana]	3.0e-11	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SL01

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 225 aas, your sequence is shorter than subject: 144 - 776

Fln protein: AYHNIVSDIYIKYLA**IF*SSSARFDILQYSNSSVEMVEGELCADGLPGQWSSADKTPSEHLDISHVDDYGVSPYELDKRIRDLLEKQQEEKISELEVELKSTEIKLHAKERELQHWKERVRCLAELSFGPIQAFPLSFIMLF

Protein Length: 145

Fln nts: AAGCCTATCATAACATTGTATCAGACATATATATAAAGTATCTGGCCTAGTAAATATTTTAATCCTCCTCTGCTCGGTTTGATATATTGCAGTACTCAAATTCCTCCGTTGAAATGGTGGAGGGAGAGCTTTGTGCAGATGGGCTTCCAGGTCAATGGAGTTCTGCAGACAAGACTCCCTCGGAACATTTAGATATTTCTCATGTTGATGACTATGGGGTGTCACCATATGAGTTAGACAAGCGTATACGTGATCTATTAGAGAAACAACAAGAAGAAAAGATTTCAGAGCTTGAGGTGGAGCTGAAGTCAACTGAGATTAAGCTACACGCTAAAGAAAGAGAACTTCAACATTGGAAGGAACGAGTTCGATGTCTTGCTGAGCTTTCATTTGGGCCAATTCAGGCATTTCCTCTCTCATTCATTATGCTCTTTTA

Fln Alignment:

AllPine_a_c27320___EMVEGELCADGLPGQWSSADKTPSEHLD-ISHVDDYGVSPYELDKRIRDLLEKQQEEKISELEVELKSTEIKLHAKERELQHWKERV
D8SL01________________EVVHSELNASGLPGV-SDIDEDDKNHSHGEGNTTNWAVSPRELDRRLRMLIETRQEERIAQLEEDLQHAENQLHDTEMELQMWKDRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain