SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101033

Length: 421 nt

UniGene Fasta

>sp_v3.0_unigene101033
AAAGAATGGGTTTGCATGGATGTTCAAGCTGCACATCTTATGTCAAATCATTCATTAAAGGAGGTTACAAAGAGTATGTTTGGCTTAGGACTTCTGCCTTGTGATAAGGAGTGCAAAAAATTATTGGAACAGAAGGTGGTCCATTCAGAGTTGCAGCAGCGTAAACAAGTGCTTGCTGAGGATAAGGTGGATCAACCGGTCACTGCAACAAAGCGAAGAAAGCGACGTGATCAAATGCAGGCAAAGGGTCAGCAGTCAAAATTGCAGGAAATATTTAATAAAATATGGCAGTATATTTTGCTGGCTTTGTTTCTGCTACTGCTGGTTGGTGCAGTATATTATGGGTATAAGGGCTTGTTTTGGCTGTCTGACTGGATGAATGAACTTGATGAGACACGTGCGAAGAAAAGACAACCAAGAA

Ace file of the UniGene sp_v3.0_unigene101033

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor-like protein [Arabidopsis thaliana] gb\|AED90905.1\| transcription factor-like protein [Arabidopsis thaliana]	-	-	3.0e-18	39%
FL-Next	sp=NF-X1-type zinc finger protein NFXL2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%

Source	Gene names
Sma3	GSVIVT00029294001; VITISV_006934;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05660.1	" ATNFXL2 sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors chr5:1691113-1695464 REVERSE LENGTH=880"	3.0e-22	45%
RefSeq	Arabidopsis thaliana	NP_196185.3	transcription factor-like protein [Arabidopsis thaliana]	3.0e-22	45%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9FFK8

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 140 - 883

Fln protein: KEWVCMDVQAAHLMSNHSLKEVTKSMFGLGLLPCDKECKKLLEQKVVHSELQQRKQVLAEDKVDQPVTATKRRKRRDQMQAKGQQSKLQEIFNKIWQYILLALFLLLLVGAVYYGYKGLFWLSDWMNELDETRAKKRQPR

Protein Length: 141

Fln nts: AAAGAATGGGTTTGCATGGATGTTCAAGCTGCACATCTTATGTCAAATCATTCATTAAAGGAGGTTACAAAGAGTATGTTTGGCTTAGGACTTCTGCCTTGTGATAAGGAGTGCAAAAAATTATTGGAACAGAAGGTGGTCCATTCAGAGTTGCAGCAGCGTAAACAAGTGCTTGCTGAGGATAAGGTGGATCAACCGGTCACTGCAACAAAGCGAAGAAAGCGACGTGATCAAATGCAGGCAAAGGGTCAGCAGTCAAAATTGCAGGAAATATTTAATAAAATATGGCAGTATATTTTGCTGGCTTTGTTTCTGCTACTGCTGGTTGGTGCAGTATATTATGGGTATAAGGGCTTGTTTTGGCTGTCTGACTGGATGAATGAACTTGATGAGACACGTGCGAAGAAAAGACAACCAAGAA

Fln Alignment:

AllPine_a_c27174___KEWVCMDVQAAHLMSNHSLKEVTKSMFGLGLLPCDKECKKLLEQKVVHSELQQRKQVLAEDKVD-QPVTATKRRKRRDQMQAKGQQSKLQEIFNKIWQYIXXXXXXXXXXXXXXXXXXXXFWLSDWMNELDETRAKKRQ
Q9FFK8________________KEWVCQDVQAAHRATGSDPKEVPKNQFGVGLLPCDSNCKSKLQ--VAESVLTQRNVKEIEEKEEPSGKNASKRRKRRGRGQDIQETTRLQKLAVTTKRILMVVMLVAMLAAVSYYGYKGLLWLSDWMNEVEEQRQKSRR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
165	75			25	0.996473
166		75	25		0.996473
167	75		25		0.996473
168	75		25		0.996473
172	50		50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain