SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100994

Length: 398 nt

UniGene Fasta

>sp_v3.0_unigene100994
ATGGGGCCCTTCCTTTTACGGAAGCCACGGCTCACCTCCTTCCACAGACCCATCTTATGTTTTCGCCTGCAACGCCGAGCGAAATAAGGTTTGCAGCATTTACACTATCTTGACACTCGGACTGAACACAAAAATATGTGCGTTTTGAAGCTCCTCTGCTTTTTCTGCTTCGTGGGTTTCTTGGTCGCGGATGGTGTTACAGATGAGAGCTTGTATAAGGTCGCGGCCTCTCTTCAGAAGTTCGTGGACGAGCTCCCACACATGCCCAAACTGAAAGGGTATATCTTCCAAGAAGGGAAGTTGAATCCGGCGGAGCTTCGGATTGGGATGTTCCAGAAAAAATGGAAATTTCACAGAGATCTTCCCCCGGCTACCGTGTTCGCGTATGGAGCATCCAA

Ace file of the UniGene sp_v3.0_unigene100994

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0126100 protein n=4 Tax=Oryza sativa RepID=Q9AWU4_ORYSJ	-	-	2.0e-16	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Putative spore coat protein	-	-	3.969e-13	-

Source	Gene names
Sma3	At1g71040; At1g71040/F23N20.3; F23N20.3; Os01g0126100; Os01g0126900; OsI_00214; OsI_00220; OsJ_00212; P0037C04.37; P0044F08.18; P0044F08.29; P0409B08.14; VITISV_028234;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	viral capsid	GO:0019028	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G71040.1	LPR2 Cupredoxin superfamily protein chr1:26797201-26800224 REVERSE LENGTH=581	1.0e-17	55%
RefSeq	Arabidopsis thaliana	NP_565008.1	cupredoxin-like protein [Arabidopsis thaliana]	1.0e-17	55%
RefSeq	Populus trichocarpa	XP_002336469.1	predicted protein, partial [Populus trichocarpa]	1.0e-16	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY9

Fln msg: Distance to subject end: 488 aas, your sequence is shorter than subject: 87 - 583

Fln protein: MCVLKLLCFFCFVGFLVADGVTDESLYKVAASLQKFVDELPHMPKLKGYIFQEGKLNPAELRIGMFQKKWKFHRDLPPATVFAYGAS

Protein Length: 88

Fln nts: ATGGGGCCCTTCCTTTTACGGAAGCCACGGCTCACCTCCTTCCACAGACCCATCTTATGTTTTCGCCTGCAACGCCGAGCGAAATAAGGTTTGCAGCATTTACACTATCTTGACACTCGGACTGAACACAAAAAT_-_ATGTGCGTTTTGAAGCTCCTCTGCTTTTTCTGCTTCGTGGGTTTCTTGGTCGCGGATGGTGTTACAGATGAGAGCTTGTATAAGGTCGCGGCCTCTCTTCAGAAGTTCGTGGACGAGCTCCCACACATGCCCAAACTGAAAGGGTATATCTTCCAAGAAGGGAAGTTGAATCCGGCGGAGCTTCGGATTGGGATGTTCCAGAAAAAATGGAAATTTCACAGAGATCTTCCCCCGGCTACCGTGTTCGCGTATGGAGCATCCAA

Fln Alignment:

AllPine_a_c27068___DGVTDESLYKVAASLQKFVDELPHMPKLKGYIFQEGKLNPAELRIGMFQKKWKFHRDLPPATVFAYGAS
B8LRY9________________DSMTDESLHKVASSLEMFVEELPDMPRLEGYVLEHGKLKPTELRIGMFETKWKFHSALPPTTVFAYGAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain