SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100966

Length: 855 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene100966 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin reductase n=1 Tax=Picea sitchensis RepID=B8LRB6_PICSI	-	-	95%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Thioredoxin reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Thioredoxin-disulfide reductase.	EC:1.8.1.9	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyrimidine metabolism	00240		0.0	%
Sma3	Selenocompound metabolism	00450		0.0	%

Source	Gene names
Sma3	At2g17420; At2g41680; At2g41680/T32G6.20; At4g35460; CHLREDRAFT_132865; CHLREDRAFT_196120; CHLREDRAFT_78928; CvNTR-C; F5J6.18; GSVIVT00006001001; GSVIVT00025615001; MICPUCDRAFT_23559; NTR1; NTR2; NTR3; NTRC; NTRC1; OJ1479_B12.9; OSJNBb0039F24.13; OSTLU_28

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	thioredoxin-disulfide reductase activity	GO:0004791	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	pollen germination	GO:0009846	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	removal of superoxide radicals	GO:0019430	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	thioredoxin biosynthetic process	GO:0042964	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	seed development	GO:0048316	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Thioredoxin reductase	IPR005982	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	-
Sma3		IPR012335	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3		IPR017909	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G41680.1	NTRC NADPH-dependent thioredoxin reductase C chr2:17376349-17379028 REVERSE LENGTH=529	78%
RefSeq	Arabidopsis thaliana	NP_565954.1	NADPH-dependent thioredoxin reductase 3 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002308935.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRB6

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 285 - 537

Fln protein: VEHQVKCHSLIVATGATAKRLGLPREHEFWSRGISACAICDGASPLFKGQELAVVGGGDTATEEAVYLTKYARHVHLLVRKDKLQASKAMQDRIFNNPNVTVHFNTEVVDVISNDKGQMSGVLLKSTNLGEQRVLDVKGLFYGIGHMPNSHLLQGQVDLDAAGYVIVKNGGPETSVEGVFAAGDLQDPEWRQAITAAGSGCMAALASERYLVKNNLLVEFHQPKVEVPTKDFTTRDVQMGFDISLTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILT

Protein Length: 286

Fln nts: GTAGAACATCAGGTCAAATGTCATAGTCTTATAGTTGCAACAGGAGCCACAGCCAAAAGGCTTGGTTTGCCACGTGAACATGAATTTTGGAGTAGAGGAATAAGTGCGTGTGCAATTTGTGATGGGGCATCCCCCTTGTTCAAAGGTCAAGAGCTGGCAGTTGTTGGAGGTGGTGATACAGCTACAGAGGAGGCAGTATACCTTACGAAATATGCTCGTCATGTACATTTGTTGGTTAGAAAGGACAAGCTACAGGCATCTAAGGCAATGCAGGACAGAATTTTCAACAATCCAAATGTAACTGTACACTTCAACACGGAGGTTGTTGATGTCATAAGCAATGACAAGGGCCAGATGTCTGGTGTTTTATTAAAAAGTACCAATCTGGGTGAACAGAGGGTGCTAGATGTGAAGGGGCTATTTTATGGAATTGGCCACATGCCTAACAGCCATCTTCTTCAAGGCCAAGTTGATCTGGATGCTGCGGGTTATGTAATTGTGAAAAATGGTGGACCTGAAACTTCTGTTGAAGGTGTCTTTGCAGCTGGTGATTTGCAGGACCCAGAATGGAGACAAGCGATAACTGCAGCTGGATCAGGCTGTATGGCAGCCTTAGCTTCTGAGCGTTATCTTGTGAAGAATAATCTTCTTGTTGAGTTCCATCAGCCAAAGGTTGAAGTGCCCACAAAGGATTTCACAACTAGGGATGTACAAATGGGTTTTGATATCTCTTTAACTAAGCATAAGGGACAGTATGCTCTTCGAAAACTATATCATGAAAGTCCACGTTTGATCTGTGTGCTTTATACGTCTCCAACATGTGGACCTTGTAGAACTCTTAAGCCCATTCTGACC

Fln Alignment:

AllPine_a_c27007___EHQVKCHSLIVATGATAKRLGLPREHEFWSRGISACAICDGASPLFKGQELAVVGGGDTATEEAVYLTKYARHVHLLVRKDKLQASKAMQDRIFNNPNVTVHFNTEVVDVISNDKGQMSGVLLKSTNLGEQRVLDVKGLFYGIGHMPNSHLLQGQVDLDAAGYVIVKNGGPETSVEGVFAAGDLQDPEWRQAITAAGSGCMAALASERYLVKNNLLVEFHQPKVEVPTKDFTTRDVQMGFDISLTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL
B8LRB6________________EHEVKCHSLIVATGATAKRLGLPHEHEFWSRGISACAICDGASPLFKGQELAVVGGGDTATEEALYLTKYAHHVHLLVRKDKLRASKAMQDRIFNNPNVTVHFNTEVIDVISNDKGQMSGVLLKSINLGEQRVLDVKGLFYGIGHMPNSHLLQGQVDLDAAGYVNVKNGGPETSVEGVFAAGDLQDPEWRQAITASGSGCMAALSAERYLVKNNLLVEFHQPKVEVPKKDFTTRDVQMGFDISLTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
543	50		50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain