SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100963

Length: 1040 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene100963

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor n=1 Tax=Vitis vinifera RepID=UPI00019835C9	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	AT1G55300 protein	-	-	2.121e-09	-

Source	Gene names
Sma3	AT1G55300; At1g55300; B1164G01.8; F7A10.3; GSVIVT00024779001; OJ1316_H05.16; Os01g0648500; Os05g0347000; OsI_03065; OsI_19562; OsJ_02817; OsJ_18168; PHYPADRAFT_120716; PHYPADRAFT_18130; POPTRDRAFT_555214; POPTRDRAFT_639652; RCOM_0212480;

Source	GOs	Term	Type	Identity
Sma3	transcription factor TFIID complex	GO:0005669	Cellular Component	-
Sma3	general RNA polymerase II transcription factor activity	GO:0016251	Molecular Function	-
Sma3	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	TAFII55 protein, conserved region	IPR006751	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55300.2	TAF7 TBP-associated factor 7 chr1:20628154-20629490 REVERSE LENGTH=239	68%
RefSeq	Arabidopsis thaliana	NP_175926.1	TBP-associated factor 7 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002299114.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
300	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain