SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100955

Length: 481 nt

UniGene Fasta

>sp_v3.0_unigene100955
ATGGGGATTTCATGAACTGCTGAACGCACTGGTATTGTCGGAGCAGTTCACACTTGGACACGTCATCGGAGATGTGAAGACTCCAAGGGATCTTTGACCACTTCTGGCCTACTGTATTGTTTTCCACTAGCAGCTGTTCGTTTTGTTTGAGCAAAGCTTCTCGTTTCAAGAGATGTAATAAATAGCAGTGCAATTAATGTGCAAACTAGGCACTGTCTAGCATCCGCCGGACACACCACATTACATGTTAGAACGCCGGACACACCACATTACATGTTAGAAAGCGAATGAAATATGTAGAGACAGCCAACCATCTGGAACGAGTGTCTAAGGATCTCCTTCCCCGTTGGTATTGAGCAGAACAAAAATCATGGCAGGAGAAGGGAGATCCCTGGCTGAAACTCCAACATGGTCTGTAGCTACAGTTACCACTGTTCTCGTCGCCATCTGTTTTATGGTGGAACGATCCATTCATCGTATT

Ace file of the UniGene sp_v3.0_unigene100955

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Similar to seven transmembrane protein Mlo4 [Oryza sativa Japonica Group]	-	-	4.0e-08	77%
FL-Next	sp=MLO-like protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Sma3	MLO-like protein 4	-	-	6.797e-10	-

Source	Gene names
Sma3	At1g11000; GSVIVT00035478001; LOC_Os11g07920; MLO4; Os11g0181400; OsI_35352; OsJ_33191; T19D16.26;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	iron-sulfur cluster assembly	GO:0016226	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NIF system FeS cluster assembly, NifU, C-terminal	IPR001075	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: O23693

Fln msg: Distance to subject end: 533 aas, your sequence is shorter than subject: 37 - 573

Fln protein: MAGEGRSLAETPTWSVATVTTVLVAICFMVERSIHRI

Protein Length: 38

Fln nts: ATGGGGATTTCATGAACTGCTGAACGCACTGGTATTGTCGGAGCAGTTCACACTTGGACACGTCATCGGAGATGTGAAGACTCCAAGGGATCTTTGACCACTTCTGGCCTACTGTATTGTTTTCCACTAGCAGCTGTTCGTTTTGTTTGAGCAAAGCTTCTCGTTTCAAGAGATGTAATAAATAGCAGTGCAATTAATGTGCAAACTAGGCACTGTCTAGCATCCGCCGGACACACCACATTACATGTTAGAACGCCGGACACACCACATTACATGTTAGAAAGCGAATGAAATATGTAGAGACAGCCAACCATCTGGAACGAGTGTCTAAGGATCTCCTTCCCCGTTGGTATTGAGCAGAACAAAAATC_-_ATGGCAGGAGAAGGGAGATCCCTGGCTGAAACTCCAACATGGTCTGTAGCTACAGTTACCACTGTTCTCGTCGCCATCTGTTTTATGGTGGAACGATCCATTCATCGTATT

Fln Alignment:

AllPine_a_c26985___MAGEGRSLAETPTWSVATVTTVLVAICFMVERSIHR
O23693________________MMKEGRSLAETPTYSVASVVTVLVFVCFLVERAIYR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain