SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100736

Length: 399 nt

UniGene Fasta

>sp_v3.0_unigene100736
TATATTGGAAAAGCCTGAGAGTATTGACGAAGGATCTGGCAACAGGTTTTTGCTTTTCTCATCGGGAGGCTCAAAAGACCCTATGTCCTGCCAACTCAAAATTACTAAAAACATTGGACTTAACGATTTTGAGCTGCTTAGGGTGGTTGGACAAGGTGCATTTCGTAAGGTGTTCCAGGTTAAAAGAATTGGAACATCGGAGATTTATGCTATGAAAGTTATGAGGAAAGACAGAATTATGGAAAAGAATCACGCGGAATACATAAAAGCTGAAAGAGACATTATGACAAGGATTGAGCATGCCTTTATTGTTCAGCTCAGATACTCCTTCCAGAGTGTGCATATTGAGTTTCTGGCGTTGAGCGTGGATATCTCAGCATTAGGTATGAATGCTGCCTA

Ace file of the UniGene sp_v3.0_unigene100736

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine/threonine protein kinase 2 [Arabidopsis thaliana] ref\|NP_850543.1\| serine/threonine protein kinase 2 [Arabidopsis thaliana] sp\|Q39030.2\|KPK2_ARATH RecName: Full=Serine/threonine-protein kinase AtPK2/AtPK19; AltName: Full=Ribosomal-protein S6 kinase	-	-	2.0e-27	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	Serine/threonine-protein kinase AtPK19	-	-	4.341e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein kinase C.	EC:2.7.11.13	-	7.405e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phosphatidylinositol signaling system	04070		7.405e-06	%

Source	Gene names
Sma3	AT3G08720; ATPK1; ATPK19; ATPK6; Aspk11; At3g08720; At3g08730; CHLREDRAFT_39110; F17O14.19; F17O14.20; GSVIVT00016180001; GSVIVT00037509001; LES1_20t00019; LOC_Os03g21620; MICPUCDRAFT_3206; MICPUN_56023; OSJNBa0008J01.16; OSTLU_3119; Os03g0334000; Os07g06

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	positive regulation of translation	GO:0045727	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Protein kinase, C-terminal	IPR017892	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G08720.1	ATPK19, ATS6K2, S6K2, ATPK2 serine/threonine protein kinase 2 chr3:2648625-2650407 REVERSE LENGTH=471	4.0e-34	58%
RefSeq	Arabidopsis thaliana	NP_850543.1	serine/threonine protein kinase 2 [Arabidopsis thaliana]	6.0e-34	58%
RefSeq	Populus trichocarpa	XP_002323086.1	predicted protein [Populus trichocarpa]	2.0e-32	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL96

Fln msg: Distance to subject end: 255 aas, your sequence is shorter than subject: 132 - 407

Fln protein: ILEKPESIDEGSGNRFLLFSSGGSKDPMSCQLKITKNIGLNDFELLRVVGQGAFRKVFQVKRIGTSEIYAMKVMRKDRIMEKNHAEYIKAERDIMTRIEHAFIVQLRYSFQSVHIEFLALSVDISALGMNAA

Protein Length: 133

Fln nts: TATATTGGAAAAGCCTGAGAGTATTGACGAAGGATCTGGCAACAGGTTTTTGCTTTTCTCATCGGGAGGCTCAAAAGACCCTATGTCCTGCCAACTCAAAATTACTAAAAACATTGGACTTAACGATTTTGAGCTGCTTAGGGTGGTTGGACAAGGTGCATTTCGTAAGGTGTTCCAGGTTAAAAGAATTGGAACATCGGAGATTTATGCTATGAAAGTTATGAGGAAAGACAGAATTATGGAAAAGAATCACGCGGAATACATAAAAGCTGAAAGAGACATTATGACAAGGATTGAGCATGCCTTTATTGTTCAGCTCAGATACTCCTTCCAGAGTGTGCATATTGAGTTTCTGGCGTTGAGCGTGGATATCTCAGCATTAGGTATGAATGCTGCCTA

Fln Alignment:

AllPine_a_c26470___LNDFELLRVVGQGAFRKVFQVKRIGTSEIYAMKVMRKDRIMEKNHAEYIKAERDIMTRIEHAFIVQLRYSFQSVHIEFLAL
B8LL96________________IEDFECEKLHGVGSYSRVVRAKKKDTGKIYALKIMDKRFIAKEKKTTYVKLERIVLDQLDHPGIIKLYFTFQDASNIYLGL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain