SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100721

Length: 1020 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene100721

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable monogalactosyldiacylglycerol synthase, chloroplastic n=2 Tax=Phaseoleae RepID=MGDG_SOYBN	-	-	0.0	54%
FL-Next	sp=Probable monogalactosyldiacylglycerol synthase, chloroplastic; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	54%
Sma3	MGDG synthase type A	-	-	4.99e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Monogalactosyldiacylglycerol synthase.	EC:2.4.1.46	-	1.503e-37	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycerolipid metabolism	00561		1.503e-37	%
Sma3	Metabolic pathways	01100		1.503e-37	%

Source	Gene names
Sma3	At2g11810; At4g31780; At5g20410; F28M20.30; F5O24.300; F7C8; F7E22.4; GSVIVT00006408001; GSVIVT00032804001; LOC_Os02g55910; LOC_Os09g25580; MGD A; MGD1; MGD2; MGD3; MGDA; MGDB; MGDC; Os02g0802700; Os09g0423600; OsI_027692; OsI_09321; OsI_28698; OsJ_008461

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid outer membrane	GO:0009527	Cellular Component	-
Sma3	plastid inner membrane	GO:0009528	Cellular Component	-
Sma3	chloroplast inner membrane	GO:0009706	Cellular Component	-
Sma3	chloroplast outer membrane	GO:0009707	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	1,2-diacylglycerol 3-beta-galactosyltransferase activity	GO:0046509	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	glycolipid biosynthetic process	GO:0009247	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	thylakoid membrane organization	GO:0010027	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-
Sma3	galactolipid metabolic process	GO:0019374	Biological Process	-
Sma3	lipid glycosylation	GO:0030259	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Glycosyl transferase, family 28, C-terminal	IPR007235	-	-
Sma3	Diacylglycerol glucosyltransferase, N-terminal	IPR009695	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31780.2	MGD1, MGDA monogalactosyl diacylglycerol synthase 1 chr4:15374222-15376961 FORWARD LENGTH=533	55%
RefSeq	Arabidopsis thaliana	NP_849482.1	Monogalactosyldiacylglycerol synthase 1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002324925.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FZL4

Fln msg: Distance to subject end: 297 aas, your sequence is shorter than subject: 229 - 530

Fln protein: MPTSVGVHVGVHEASVWMDTVSVCPIFSVESAEIATLLDPLFCSIVQRSSVSAARFNAQNNGKNIFKPLASSSSTRNHGGWREFNQLIRLHCERVHIGFASINAPGSSYGLHGGDSTVRGEECNGVQISGRDSAKKVLVLMSDTGGGHRASAEAIKAAFQLEFGDQYKVYVTDLWKDHTPWPFNQIPRSYSFLVKHGTLWKATFHGTAPRIVHQTNFAATHAFIAREVA

Protein Length: 230

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCATAGCTAATGGTCCAACTCATATTCTTCTTCGAGGAACACAAGAGCAGCGTTCGATTCTTCATGTCCTTCCTGCATCATTTTGAATGGTTATTCACACAGACGCCTGAAAAACCATGATAATCCGCGGATGTAAGATTGATTCCCACATGTATTCCGCTTCTGGATTTCAATAGATATATGAAAAAATCCATAGATATATGAAAATGCTAGTCACCAATGAGCAATAATCAAGCCTGAGAACAATTGTTCTCGGCGAGAAGATAATTTTTCTTATTGGAATTTGACTGTAAAGAATAACAAATA_-_ATGCCTACTTCTGTTGGTGTTCACGTTGGTGTTCACGAGGCCTCTGTATGGATGGATACAGTTTCCGTCTGCCCTATTTTCTCTGTGGAATCCGCTGAGATCGCCACACTGTTAGACCCACTTTTTTGTAGCATAGTTCAGAGGAGTTCAGTTAGTGCTGCCAGGTTCAATGCTCAAAACAATGGCAAAAATATATTTAAGCCCCTTGCAAGCAGTTCTTCTACGAGGAACCATGGTGGTTGGAGGGAGTTCAACCAGTTGATAAGGCTGCATTGTGAGAGGGTTCATATTGGTTTTGCTTCAATAAATGCTCCTGGCTCTTCCTATGGGTTGCACGGCGGGGATTCTACTGTCAGGGGGGAGGAATGCAACGGGGTTCAGATTAGTGGTAGAGATAGTGCTAAGAAGGTTCTAGTTCTCATGAGTGACACAGGTGGTGGACACCGTGCTTCGGCAGAGGCCATCAAGGCGGCTTTCCAGCTAGAGTTTGGTGATCAGTACAAGGTGTACGTGACAGACTTATGGAAAGATCACACCCCTTGGCCATTTAATCAAATACCGAGGAGCTACAGCTTCTTGGTGAAGCATGGGACTCTCTGGAAAGCTACCTTCCATGGAACTGCTCCGCGCATTGTACATCAAACAAATTTTGCAGCAACGCATGCCTTTATTGCTAGAGAAGTGGCAA

Fln Alignment:

AllPine_a_c26433___RSSVSAARFNAQNNGKNIFKPLASSSSTRNHGGWREFNQLIRLHCERVHIGFASINAPGSSYGLHGGDST----VRGEECNGVQISG-------RDSAKKVLVLMSDTGGGHRASAEAIKAAFQLEFGDQYKVYVTDLWKDHTPWPFNQIPRSYSFLVKHGTLWKATFHGTAPRIVHQTNFAATHAFIAREVA
Q9FZL4________________RTGAAAAKRGVSLGGK------VGGASVRFGNILNDFNRAVRFHCEKIPIGFASLRVGDGGDGADGNGNGEGNGVRVDECGGVENEGFRGNGVEGEKPKKVLILMSDTGGGHRASAEAIKAAFYQEFGDDYQVFVTDLWADHTPWPFNQLPRSYSFLVKHGPLWKMTYYGTAPRVVHQSNFAATGTFIAREVA

SNPs (tot: 3)

Position	A %	C %	T %	Probability
237		66	33	1.0
896	33	66		0.997452
897		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain