SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100649

Length: 469 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene100649
GCTGCTCTTACAACTACCAAGTATGGTGTTAGTAGAATGAACATATTCAAAGCCTTCTCGAATGACGCTTCTTCTTGGTCCACCTGGTGCTGGAAAAACGACATTGCTAACGACTCTGGCTGGAAGGCCCGATCGTGATCTCAAAGTTACTGGAACTGTAACCTACAATGGGCACTCGTTAAATGAATTCGTGCCTCAAAGAACGTCTACTTATATTAGCCAGCATGATTTGCACCTTCGTGAAATGACAGAAAGGGAGACATTGGATTTCTCTGGGCGTTGCCAAGGAGATACGAATTGCTGCAAGAACTTTCAAAACGTGAAAAGCAGGCAGGCATCAAACCGGATTCGGATGTTGATATCTTCATGAAGGAAACTGCAATTGAGGGAAAACGGACTAACTTTGTCACGGACTATTAGAAGAGTTATCGCATCCATTTGATAGACAAAAGAACCATCCCGCTACATT

Ace file of the UniGene sp_v3.0_unigene100649 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NpPDR1 emb\|CAC40990.1\| ABC1 protein [Nicotiana plumbaginifolia]	-	-	2.0e-28	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	ATP-binding cassette transporter, putative	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	0.0	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	9.794e-11	-

Source	Gene names
Sma3	ABC1; At1g15210; At1g15520; At1g59870; At1g66950; At2g26910; At2g29940; At2g36380; At2g37280; At3g16340; At3g30842; At3g53480; At4g15215; At4g15220/At4g15230; At4g15233; At4g15236; B1045F02.15; B1090H08.39; F12C20.5; F1O11.1; F1O19.3; F23F1.14; F23H11.19;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3		IPR015706	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36380.1	PDR6, ATPDR6 pleiotropic drug resistance 6 chr2:15257583-15263627 FORWARD LENGTH=1453	8.0e-28	68%
RefSeq	Arabidopsis thaliana	NP_181179.2	ABC transporter G family member 34 [Arabidopsis thaliana]	1.0e-27	68%
RefSeq	Populus trichocarpa	XP_002324840.1	predicted protein [Populus trichocarpa]	1.0e-29	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 124 aas, your sequence is shorter than subject: 140 - 443

Fln protein: LLLQLPSMVLVE*TYSKPSRMTLLLGPPGAGKTTLLTTLAGRPDRDLKVTGTVTYNGHSLNEFVPQRTSTYISQHDLHLREMTERETLDFSGRCQxxYELLQELSKREKQAGIKPDSDVDIFMKETAIEGKRTNFVTDY*

Protein Length: 141

Fln nts: GCTGCTCTTACAACTACCAAGTATGGTGTTAGTAGAATGAACATATTCAAAGCCTTCTCGAATGACGCTTCTTCTTGGTCCACCTGGTGCTGGAAAAACGACATTGCTAACGACTCTGGCTGGAAGGCCCGATCGTGATCTCAAAGTTACTGGAACTGTAACCTACAATGGGCACTCGTTAAATGAATTCGTGCCTCAAAGAACGTCTACTTATATTAGCCAGCATGATTTGCACCTTCGTGAAATGACAGAAAGGGAGACATTGGATTTCTCTGGGCGTTGCCAAxxxxxxTACGAATTGCTGCAAGAACTTTCAAAACGTGAAAAGCAGGCAGGCATCAAACCGGATTCGGATGTTGATATCTTCATGAAGGAAACTGCAATTGAGGGAAAACGGACTAACTTTGTCACGGACTATTAGAAGAGTTATCGCATCCATTTGATAGACAAAAGAACCATCCCGCTACATT

Fln Alignment:

AllPine_a_c26242___LKVTGTVTYNGHSLNEFVPQRTSTYISQHDLHLREMTERETLDFSGRCQGxxxRYELLQELSKREKQAGIKPDSDVDIFMKETAIEGKRTNFVTDY
B8LN70________________LKVEGEVKYNGHALNEFVPERTSTYISQHDTHMGELTVRETLNFSARCQGxxxRYDVLTELSRREKQLGVKPDSDIDVFMKATAIEGQETSVMTDY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain