SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100467

Length: 511 nt

UniGene Fasta

>sp_v3.0_unigene100467
ATGGGGGAGAAGGTAATCAGATTGGTAGAAAAATTCATATCCCTAGGTGGGATAGGAGGATTGATGAGGGGAATAGGGATGATGATAGAGATAATACTGAAAAACAGAAGAATTCCATACGGGTACAACTATTATTTGAACGAAGTGCGAAAAATGCGATCTTTGTTGTCCAATAGAACAAACACTAATACCTTAATTGGGTCGGTCAAAATCTTAAACTATCAAAGTGCTTCTCTAATTGCTCAGGACATATCTTTCCAACTGAGGGACAGAACAAGATCATTTCGTTCCATTTTAGTCAAATAGTTCGGGATATTCCATTAGTAATGCCCAAAGGGGTGAGGGGATCCGTATTTGTTGTTTAGGTCGATTGAAAGGTGCAGAAATAGCTAGAACCGAATGCATGGGTATGGAAACATCTTGTAATGCATTTCGCCATAAATTGATTACGCTTCTGCGAAAGTATCTACTCGTTATGGGATCTTAGGTGTCAAAGTGTGGATCTCATTTC

Ace file of the UniGene sp_v3.0_unigene100467

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI	-	-	2.0e-39	59%
FL-Next	tr=Ribosomal protein S3; Pinus monophylla. Mitochondrion.	-	-	0.0	72%
Sma3	Ribosomal protein S3	-	-	0.0	-

Source	Gene names
Sma3	AtMg00090; GSVIVT00030175001; LOC_Os12g34070; LOC_Os12g34130; POPTRDRAFT_292079; RCOM_2145580; RPS3; YRPS3; Yrps3; rps3;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L16	IPR000114	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	IPR000440	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3		IPR008282	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	Ribosomal protein S3, conserved site	IPR018280	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00090.1	" structural constituent of ribosome;protein binding chrM:25482-28733 REVERSE LENGTH=556"	3.0e-27	51%
RefSeq	Arabidopsis thaliana	NP_085481.1	ribosomal protein S3 (mitochondrion) [Arabidopsis thaliana]	4.0e-27	51%
RefSeq	Populus trichocarpa	XP_002333496.1	predicted protein, partial [Populus trichocarpa]	2.0e-29	53%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D2DWJ2

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 170 - 557

Fln protein: MGEKVIRLVEKFISLGGIGGLMRGIGMMIEIILKNRRIPYGYNYYLNEVRKMRSLLSNRTNTNTLIGSVKILNYQSASLIAQDISFQLRDRTRSFRSILVK*FGIFH**CPKG*GDPYLLFRSIERCRNS*NRMHGYGNIL*CISP*IDYASAKVSTRYGILGVKVWISF

Protein Length: 171

Fln nts: ATGGGGGAGAAGGTAATCAGATTGGTAGAAAAATTCATATCCCTAGGTGGGATAGGAGGATTGATGAGGGGAATAGGGATGATGATAGAGATAATACTGAAAAACAGAAGAATTCCATACGGGTACAACTATTATTTGAACGAAGTGCGAAAAATGCGATCTTTGTTGTCCAATAGAACAAACACTAATACCTTAATTGGGTCGGTCAAAATCTTAAACTATCAAAGTGCTTCTCTAATTGCTCAGGACATATCTTTCCAACTGAGGGACAGAACAAGATCATTTCGTTCCATTTTAGTCAAATAGTTCGGGATATTCCATTAGTAATGCCCAAAGGGGTGAGGGGATCCGTATTTGTTGTTTAGGTCGATTGAAAGGTGCAGAAATAGCTAGAACCGAATGCATGGGTATGGAAACATCTTGTAATGCATTTCGCCATAAATTGATTACGCTTCTGCGAAAGTATCTACTCGTTATGGGATCTTAGGTGTCAAAGTGTGGATCTCATTTC

Fln Alignment:

AllPine_a_c25825___EKVIRLVEKFXXXXXXXXXXXXXXXXXXXXXKNRRIPYGYNYYLNEVRKMRSLLSNRTNTNTLIGSVKILNYQSASLIAQDISFQLRDRTRSFRSILVK*FGIFH**CPKG*GDPYLLFRSIERCRNS*NRMHG----------YGNI-L*CISP*IDYASAKVSTRYGILGVKVWISF
D2DWJ2________________EKVIRLVEKFISLGGIGGLMRGIGMMIEIILKNRRIPYGYNYYLNEVRKMRSLLSNRTNTNTLIGSVKILNYQSASLIAQDISFQLRDRTRSFRSIFSQIVRDIPLVMPKG-------VRGIRICCS--GRLKGAEIARTECREYGKTSCNVFRHKIDYASAKVSTRYGILGVKVWISF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain