SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100457

Length: 1218 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene100457 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG4886 Leucine-rich repeat (LRR) protein	-	-	3.0e-20	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%

Source	Gene names
Sma3	PHYPADRAFT_132267; PHYPADRAFT_132491; PHYPADRAFT_133852; PHYPADRAFT_141262; PHYPADRAFT_145827; PHYPADRAFT_148; PHYPADRAFT_157249; PHYPADRAFT_157312; PHYPADRAFT_197084; PHYPADRAFT_24495;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 130 aas, putative chimeric sequence, your sequence is shorter than subject: 284 - 618

Fln protein: MGSGCESLEKLPHSLGNLTALRSIQLNGCKSLKKLPKSLGELTNLRDIDLSGCKSLKKLPNSMGNLSQLRCLDLSHCSTCSFALPGNITTLQYLGLSGCVQMAALPAQVEHQKSLVVLNLVGTNLKELTNAQTACLSNLKYLKYLFLGSPLLKELPPSFGCLSSLSVLRLHGCHELKRLPESIGLLTELTQLEISKCGIQELPDLMEMNNLETLRVRDCPLRELPFKEESASRRKRKRRATEKGLIRLTWLELYCTDVREVSFPEGVCINLRILRIMCCNDLV*

Protein Length: 285

Fln nts: ATGGGGTCCGGTTGCGAAAGTTTGGAAAAGCTTCCACATTCCTTGGGAAATTTGACAGCACTCCGATCCATTCAGTTGAATGGCTGCAAAAGTTTAAAGAAGCTTCCGAAATCGTTGGGGGAGTTAACAAATCTCCGAGACATTGATTTGTCTGGATGCAAAAGTTTGAAGAAGCTTCCGAATTCGATGGGGAATCTATCGCAGCTGAGATGTCTGGATTTGAGTCATTGTAGCACGTGTTCGTTTGCACTACCTGGAAACATCACCACGCTTCAGTACTTAGGCTTATCAGGATGTGTCCAAATGGCAGCATTGCCCGCCCAAGTGGAACATCAGAAGTCCTTGGTAGTGTTGAATCTGGTGGGTACAAACTTAAAAGAGTTGACCAATGCGCAGACTGCATGCCTAAGCAATTTGAAATATTTGAAATATCTGTTCTTAGGAAGTCCTTTGTTGAAAGAGCTGCCACCTTCGTTCGGTTGCCTATCGAGTTTGAGCGTACTGCGGCTCCATGGATGCCACGAATTGAAACGCCTGCCCGAGTCAATTGGACTGTTGACTGAGTTGACTCAGTTGGAGATATCAAAATGTGGAATACAAGAGTTACCAGATCTCATGGAGATGAACAATCTCGAAACTTTAAGAGTACGCGATTGTCCGCTGCGGGAACTGCCATTTAAGGAGGAGTCTGCCTCGAGGAGAAAGAGAAAGCGAAGAGCAACGGAGAAAGGCCTGATTCGGCTGACGTGGTTAGAGTTGTACTGCACAGATGTAAGAGAGGTATCTTTTCCTGAAGGTGTGTGCATCAACCTTAGAATCCTAAGAATCATGTGTTGTAATGATTTGGTGTAA___GGTTCGTTTGCCAGCAACAGTAAAGAATCTGACTTTGAGGGGTTGCCGTGTGTTGGGAAAAGTAGAAGGGCTTAGTGGGTTGGCAGAATCTTTGCGGGAGGTAGACCTGCGAGGGTGTTGTAATATAGAAATGGGGGAGGTGCCACATTTCGGGAATACCACGCGTTTATTCATCCCAACTGACACTTATAACCCCCAGGAGGATGAGGAGGAGGAGGAGGAGGGTGTCCTGCCGTATCGTTTTGTCCAAGAACTTGACAACATGAAGCAGGTTTGGCTAGAAAGGTAAATATGAAAACAATCTTAGTTGTTTGCGGTGGAGTGTAAATATGGAAGGTATCTTAGTTGTGTTATATATTTATGAAA

Fln Alignment:

AllPine_a_c25806___LEKLPHSLGNLTALRSIQLNGCKSLKKLPKSLGELTNLRDIDLSGCKSLKKLPNSMGNLSQLRCLDLSHCS--TCSFALPGNITTLQYLGLSGCVQMAALPAQVEHQKSLVVLNLVGTNLKELTNAQTACLSNLKYLKYLFLGSPLLKELPPSFGCLSSLSVLRLHGCHELKRLPESIGLLTELTQLEISKCGIQEL-PDLMEMNNLETLRVRDCPLREL---------------PFXXXXXXXXXXXXXATEKGLIRLTWLELYCTDVREVSFPEGVCINLRILRIMCCNDLV
B8LMZ7________________LKSLPEEFCQLSSLKYLHLL-CPDMKSLPDSFGYLTNLQHLNLSRCRSLQGFPNSFRNLIRLKYLNLEYCSDLTMSEETFANISTLEYLNLSDCKSVQVLPRQLAHQPSLEILSLSETNLKELPGD----IGNLSSLEELSLGNSLLEMLPCSLGHLSSLKKLWVCDSPELKSLPDSLGQLTQLSTLWVGGCGIQSLPPEVAKMNNLVELRVRECPLRELLLKNQAEGEEETLADPTGRRESNLDSSVANAQQQCMYRLGYLQLWQTEISHISFGEGVCPNLKQLDIRSCAHLV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
737		33	33	33	0.997753

SSRs (tot: 1)

Start position	End position	Sequence	Length
143	161	CCT CCT CCT CCT CCT CCT C	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain